1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCCTTGAAGAAGGAAAGTGTTCCCGTCAAAAGACTCATTGTTAATCAGCTTCTCCCGCCATCCTCCTCAGATTGCAAATTTTGCTCTATTAAGAGAAAGgtatacacacaaacacaaacacaagcttctcatgaactgatagtctctttaaaccaaagaccggtcttgcctactcctcaaaccacaatgtgcttctgttcttgttttgttctgtggtatgaacatgcatctaaaacctgaaaaatgaacatgcag
species | Arabidopsis thaliana |
transcript | AT3G10350.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTCTCCCGCCATCCTCCTCAGATTGCAAATTTTGCTCTATTAAGAGAAAG GACCAAATGCGGGCTCTTGATATGATCCGGGAGGATTCAGAACTCTCTGEST: gi|47828746|gb|CK118430.1|CK118430
genomic: TTCTCCCGCCATCCTCCTCAGATTGCAAATTTTGCTCTATTAAGAGAAAGgtatacacac ... gaacatgcagGACCAAATGCGGGCTCTTGATATGATCCGGGAGGATTCAGAACTCTCTG
EST: AATTGGAAAAACTAAGAGAAAGGATGGTTAAAGTTCGCGAGCTTTTCCGTGACACAGAGTCAACAGAATTCGTCATTGTCACTATCCCAACGEST: gi|116412741|gb|EG455333.1|EG455333
genomic: AATTGGAAAAACTAAGAGAAAGGATGGTTAAAGTTCGCGAGCTTTTCCGTGACACAGAGTCAACAGAATTCGTCATTGTCACTATCCCAACG
EST: GCCGACAAATTGGAAAAACTAAGAGAAAGGATGGTTAAAGTTCGCGAGCTTTTCCGTGACACAGAGTCAACAGAATTCGTCATTGTCACTATCCCAACG
genomic: GCCGACAAATTGGAAAAACTAAGAGAAAGGATGGTTAAAGTTCGCGAGCTTTTCCGTGACACAGAGTCAACAGAATTCGTCATTGTCACTATCCCAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCTTGAAGAAGGAAAGTGTTCCCGTCAAAAGACTCATTGTTAATCAGCTTCTCCCGCCATCCTCCTCAGATTGCAAATTTTGCTCTATTAAGAGAAAGgtatacacacaaacacaaacacaagcttctcatgaactgatagtctctttaaaccaaagaccggtcttgcctactcctcaaaccacaatgtgcttctgttcttgttttgttctgtggtatgaacatgcatctaaaacctgaaaaatgaacatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA