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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCATGGTACTCGCAGATGGCGGGTTGTGCTGTATTGATGAGTTCGATAAAATGACCACCGAGCATCAGgttttttcttatcggcaatgtcattacttctgatgttgacatttttctcattacttacatcactttgcaacag

Basic information

species Arabidopsis thaliana
transcript AT3G09660.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G09660.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os05g38850.1 (Oryza sativa), 5'ss of exon 9
GTGCCATGGTACTCGCAGATGGCGGGTTGTGCTGTATTGATGAGTTCGATAAAATGACCACCGAGCATCAGgttttttcttatcggcaatgtcattacttctgatgttgac---atttttctcattacttacatcac-tttgcaacag--------------
|||||||||| || || ||  | ||  | |||||||| |||||||||||||||||| |  | ||||||||||||||  | |      |   ||| |   |   ||||| |    |     || |      ||||||  |||  ||                 
GTGCCATGGTCCTTGCTGACCGTGGAATATGCTGTATCGATGAGTTCGATAAAATGTCAGCAGAGCATCAGgttttaaccttgtataagcttcact--ctgaaatgttaattagaaagccctaacctgccacatcatgtttctaatgaatttgagttcatag

upper sequence: AT3G09660.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA19G36230.1 (Glycine max), 5'ss of exon 8
GTGCCATGGTACTCGCAGATGGCGGGTTGTGCTGTATTGATGAGTTCGATAAAATGACCACCGAGCATCAGgttttttct----tatc-ggcaat---------gtcattacttctg---atgttgacatttttctcattactt--acatcactttgcaacag-----
|||| ||||| || || ||  | || |||||||||||||| ||||| ||||||||| | || ||||||||||||| ||||    | || ||||||         || | |||||      || || |  |||| |     || |  || | |  ||| || |      
GTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGACGAGTTTGATAAAATGTCAACAGAGCATCAGgtttgttctctggtgtctggcaatcaatttcttgttactactttaatatattttaaacttttacctgaaaccttaacgtgaaattgtaataatacag