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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTGGTGAGTCTGCTTCAAAATGCTGAATTTGACATTAAGAAGGAAGCTGCATGGGCAATTTCAAATGCAACTTCAGGTGGTTCTCATGATCAAATAAAgtatgtcactgtcttttttgcgttcctctaacttccagtttcttctctcatatatatactttgtgtatatatatattgatgttctgttcccgttggttatacag

Basic information

species Arabidopsis thaliana
transcript AT3G06720.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06720.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
CGTTGGTGAGTCTGCTTCAAAATGCTGAATTTGACATTAAGAAGGAAGCTGCATGGGCAATTTCAAATGCAACTTCAGGTGGTTCTCATGATCAAATAAAgtatgtcactgtcttttttgcgttcctctaacttccagtttcttctctcatatatatact---ttgtgtatatatatattgatgttctgttcccgttgg--ttatacag-------------
|  |||||| |||||| ||||  || || || || || |||||||||||||||||||| || |||||||| |||||||| |||   ||||||||||| ||||||||   |       ||||     |   | |  ||| ||  |       | |||||     ||   ||  |  || || |  |||  ||    |||   || ||  |             
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtt--tactcaccttgcaccagttctatt--cagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag

upper sequence: AT3G06720.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 9
CGTTGGTGAGTCTGCTTCAAAATGCTGAATTTGACATTAAGAAGGAAGCTGCATGGGCAATTTCAAATGCAACTTCAGGTGGTTCTCATGATCAAATAAAgtatgtcactgtcttttttgcgttcctctaacttccagtttcttctctcatat---atatactttgtgtatatatatattgat----gttctgttcccgttggttatacag-----
| ||| ||   ||||||||||  || || ||||| || |||||||| ||||| ||||| || |||||||| || || |||||||||||||| ||||| ||||||   ||  |   ||    | | | ||  |||   | || | |  |  | |   ||  |  || ||||| |     ||||      ||  |  | | |   || |   |     
CTTTGTTGCAACTGCTTCAAACAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAATGCTACCTCTGGTGGTTCTCATGAGCAAATCAAgtatactaccttgactt----gctgcactgccttttggcttgtgcagttgtgtgcaatgcaacttatgtatgtcacctttgaacggaatttagaactcatgttttgtcttgcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164095532|gb|ES110728.1|ES110728
EST:     GGTTCTCATGATC-AATAAA                         ATACCTGGTGGAGCAAGGGTGCATAAAACCATTATGCGATCTCCTGGTTTA
genomic: GGTTCTCATGATCAAATAAAgtatgtcact ... ggttatacagATACCTGGTGGAGCAAGGGTGCATAAAACCATTATGCGATCTCCTGGTTT-
EST: gi|124807324|gb|EH893728.1|EH893728
EST:     TGGTTCTCATGATCAAATAAA                         ATAACCTGGTGGAGCAAGGGTGCATAAAACCATTATGCGATCTCCTGGTTT
genomic: TGGTTCTCATGATCAAATAAAgtatgtcact ... ggttatacagAT-ACCTGGTGGAGCAAGGGTGCATAAAACCATTATGCGATCTCCTGGTTT