1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATTGAGAAAATCCTAGAGGAGAAATTACCATCAATCGTGAACAATGATCCAACATCTTTGGCTGTACTCAATGCTGCCACGCATTTCAAATTGCATCAGgtaaagtgtacaactctgtggaatattgtgttttttcttaccctgactcttaataataatggtctgctgcttacggtcatcaacag
species | Arabidopsis thaliana |
transcript | AT3G06580.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCCACGCATTTCAAATTGCATCAG AGAGCTGCACACGTTTATTCCGAAGCCCGGAGGGTTCATGGTTTCAAGGACEST: gi|116456852|gb|EG499444.1|EG499444
genomic: GCCACGCATTTCAAATTGCATCAGgtaaagtgta ... tcatcaacagAGAGCTGCACACGTTTATTCCGAAGCCCGGAGGGTTCATGGTTTCAAGGAC
EST: GCCACGCATTTCAAATTGCATCAG AGAGCTGCACACGTTTATTCCGAAGCCCGGAGGGTTCATGGTTTCAAGGACEST: gi|125123097|gb|EL169546.1|EL169546
genomic: GCCACGCATTTCAAATTGCATCAGgtaaagtgta ... tcatcaacagAGAGCTGCACACGTTTATTCCGAAGCCCGGAGGGTTCATGGTTTCAAGGAC
EST: CATTTCAAATTGCATCAG AGAGCTGCACACGTTTTATTCCGAAGCCCGGAGGGTTCATGGTTTCAAGGA
genomic: CATTTCAAATTGCATCAGgtaaagtgta ... tcatcaacagAGAGCTGCACACG-TTTATTCCGAAGCCCGGAGGGTTCATGGTTTCAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGAGAAAATCCTAGAGGAGAAATTACCATCAATCGTGAACAATGATCCAACATCTTTGGCTGTACTCAATGCTGCCACGCATTTCAAATTGCATCAGgtaaagtgtacaactctgtggaatattgtgttttttcttaccctgactcttaataataatggtctgctgcttacggtcatcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC