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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTCTTCCCACAAAATCTGATCAGTCAAATGAAAACTCCACTTTTTATCGTCAACGCAGCATATGATACATGGCAGgttatgttttttctccctttgaaaagtgccacattgctactaaagaacagaaagttgatggttaggctgacaagtctctgtaatggtttttaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G05910.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116404724|gb|EG447316.1|EG447316
EST:     AAATGAAAACTCCACTTTTTATCGTCAACGCAGCATATGATACATGGCAG                         ATTCAAAGCAGTATAGCTCCAACATCAGCTGATCCTAGTGGATTTTGGCAT
genomic: AAATGAAAACTCCACTTTTTATCGTCAACGCAGCATATGATACATGGCAGgttatgtttt ... ttttaaacagATTCAAAGCAGTATAGCTCCAACATCAGCTGATCCTAGTGGATTTTGGCAT
EST: gi|125233908|gb|EL247993.1|EL247993
EST:     GATACATGGCAG                         ATTCAAAGCAGTATAGCTCCAACATCAGCTGATCCTAGTGGATTTTGGCAT
genomic: GATACATGGCAGgttatgtttt ... ttttaaacagATTCAAAGCAGTATAGCTCCAACATCAGCTGATCCTAGTGGATTTTGGCAT
EST: gi|86077705|gb|DR373462.1|DR373462
EST:     AAATGAAAACTCCACTTTTTATCGTCAACGCAGCATATGATACATGGCAG                         ATTCAAAGCAGTATAGCTCCAACATCAGCTGATCCTAGTGGATTTTGGCAT
genomic: AAATGAAAACTCCACTTTTTATCGTCAACGCAGCATATGATACATGGCAGgttatgtttt ... ttttaaacagATTCAAAGCAGTATAGCTCCAACATCAGCTGATCCTAGTGGATTTTGGCAT
EST: gi|125294434|gb|EL308519.1|EL308519
EST:     AAATGAAAACTCCACTTTTTATCGTCAACGCAGCATATGATACATGGCAG                         ATTCAAAGCAGTATAGCTCCAA
genomic: AAATGAAAACTCCACTTTTTATCGTCAACGCAGCATATGATACATGGCAGgttatgtttt ... ttttaaacagATTCAAAGCAGTATAGCTCCAA