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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCTGTGCTTTATGCTTGCAAAAACGTGCAAATCCATCAGTTGTCACTGTCTCTGGATTTGTTTTCTGCTATTCTTGCGTATTTAAGTATGTTTCAAAGgtgagttctccaaatcattactctctattcccaaaccccaaccttggtattagcttatatccgtcttctatggtaatcacacag

Basic information

species Arabidopsis thaliana
transcript AT3G04460.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04460.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA19G43700.1 (Glycine max), 5'ss of exon 7
CCTCTGTGCTTTATGCTTGCAAAAACGTGCAAATCCATCAGTTGTCACTGTCTCTGGATTTGTTTTCTGCTATTCTTGCGTATTTAAGTATGTTTCAAAGgtgagttctccaaatcattactctctattcccaaacccc---aaccttggta--ttagcttatatccgtcttctatggtaatcacacag-------------
  | ||  | ||||||| |||||| |||||||||||||| || || ||||| || || ||||| ||||||||| ||||| ||||||||||| || |  |||||||  ||| | |   ||  |  |||     || |      ||      |   |   | || ||     || | || ||  ||                  
AATTTGCCCCTTATGCTCGCAAAAGCGTGCAAATCCATCTGTAGTTACTGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGgtgagagctctagac--ttgatggctaaatttaagctattggaatacaaatcactctacctaaatttaagttttttgatagccaggagttacataatcccac

upper sequence: AT3G04460.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA03G41050.1 (Glycine max), 5'ss of exon 8
CCTCTGTGCTTTATGCTTGCAAAAACGTGCAAATCCATCAGTTGTCACTGTCTCTGGATTTGTTTTCTGCTATTCTTGCGTATTTAAGTATGTTTCAAAGgtgagttctccaa--atcattactct--ctattcccaaaccccaaccttggtattagcttatatccgtcttctatggtaatc-acacag------------
  | ||  | ||||||| |||||| |||| ||||||||| || ||  | || || || ||||| ||||||||| ||||| ||||||||||| || |  |||||||  ||| |   ||| ||||| |  ||| |    ||||   |  |   |   | ||  | |     ||  ||| |  || | || |            
AATTTGCCCCTTATGCTCGCAAAAGCGTGTAAATCCATCTGTAGTTTCAGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGgtgagagctctagacatccttactgtgactaatatataacctacatataaatgcaaactggt-tttacttttcatgattctctatactgacgacttcatga

upper sequence: AT3G04460.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv14s0036g01130.t01 (Vitis vinifera), 5'ss of exon 9
CCTCTGTGCTTTATGCTTGCAAAAACGTGCAAATCCATCAGTTGTCACTGTCTCTGGATTTGTTTTCTGCTATTCTTGCGTATTTAAGTATGTTTCAAAGgtgagttctccaaatcatt--------actctctattcccaaaccccaaccttggtattagcttatatccg-----tcttctatggtaatcacacag---
  | ||  || ||||||  || || ||| ||||||||||||| ||  |||| || || ||||| ||||||||| ||||| ||||||||||||||||  ||||||| ||||||  |  ||        ||| | |  ||   ||    ||  ||  | || |  |  ||  |     |  |  | ||   |          
AATATGCCCTCTATGCTCACAGAAGCGTACAAATCCATCAGTAGTTGCTGTATCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATGTTTCTCAGgtgaggtctccagtttcttttcagttgactatttcctcttgaaatggaattttattttttgtgttaatgagaagatttgttaaagggggtggtgtgagta