1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTCACCTGTTAGCCATCGGCTTCCAGGACTGATGGAATATCAAGGAGTTGGCTTGAGATCTCAATACCCTGTTGAGAGAAAATGGGCTCTTGGACTTCAGgttttgatattttctgtatttatggtataaagacttcagcttttgatatatatgtgattaatattgtaacaatttgatcgcacag
species | Arabidopsis thaliana |
transcript | AT3G01090.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCTTGAGATCTCAATACCCTGTTGAGAGAAAATGGGCTCTTGGACTTCAG TCTCGGGCTCATCCCCGTGAAATAATGACGGAAGTCCTGAAAGEST: gi|124787153|gb|EH876832.1|EH876832
genomic: GCTTGAGATCTCAATACCCTGTTGAGAGAAAATGGGCTCTTGGACTTCAGgttttgatat ... gatcgcacagTCTCGGGCTCATCCCCGTGAAATAATGACGGAAGTCCTGAAAG
EST: GGCTCTTGGACTTCAG TCTCGGGCTCATCCCCGTGAAATAATGACGGAAGTCCTGAAAGCCCTGCAAEST: gi|124889038|gb|EH967940.1|EH967940
genomic: GGCTCTTGGACTTCAGgttttgatat ... gatcgcacagTCTCGGGCTCATCCCCGTGAAATAATGACGGAAGTCCTGAAAGCCCTGCAA
EST: CTCTTGGACTTCAG TCTCGGGCTCATCCCCGTGAAATAATGACGGAAGTCCTGAAAGCCCTGCAA
genomic: CTCTTGGACTTCAGgttttgatat ... gatcgcacagTCTCGGGCTCATCCCCGTGAAATAATGACGGAAGTCCTGAAAGCCCTGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCACCTGTTAGCCATCGGCTTCCAGGACTGATGGAATATCAAGGAGTTGGCTTGAGATCTCAATACCCTGTTGAGAGAAAATGGGCTCTTGGACTTCAGgttttgatattttctgtatttatggtataaagacttcagcttttgatatatatgtgattaatattgtaacaatttgatcgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC