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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCACTTGGCTTGGTTGTTGCCTTGAACTACCACAACCCTTTCTTGAATCCGTATGAGGAATTTCAGgtatgtcaatttctcataacgatagacttttcagcggttactacaaatacatttctaaaacccatcatttttatcctccaaatag

Basic information

species Arabidopsis thaliana
transcript AT2G43400.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43400.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA15G03360.1 (Glycine max), 5'ss of exon 9
GTTGCACTTGGCTTGGTTGTTGCCTTGAACTACCACAACCCTTTCTTGAATCCGTATGAGGAATTTCAGgtatgtcaatttctcataacgatagactt-------ttcagcggttactacaaatacatttctaaaacccatcatttttatcctccaaatag--------
 |  |  | ||| | || ||||| || ||||| || ||||||||| ||||||| ||||||||||| ||||||  |    || |  | | ||||   ||       ||    |  || || |  |   ||  ||       |  ||  |||  |   ||||         
ATATCTATAGGCCTTGTGGTTGCTTTAAACTATCAGAACCCTTTCATGAATCCTTATGAGGAATTCCAGgtaaattttattgttcttatgatacgtttaaaaaaatttgttgtctagtatacgttacttggtattgatgttgcttcatatttttttaatatggaaacat

upper sequence: AT2G43400.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv05s0102g01110.t01 (Vitis vinifera), 5'ss of exon 9
GTTGCACTTGGCTTGGTTGTTGCCTTGAACTACCACAACCCTTTCTTGAATCCGTATGAGGAATTTCAGgtatgtcaatt-tctcataacgatagacttttca-gcg-gttactacaaatacatttctaaaacccatcatttttatcctccaaatag------------
||| || ||||| | || ||||| ||||| || ||||||||||||||||| || ||||| ||||| |||||| ||  ||  |||  |    ||  |  ||  |   | |||  | | | |   | | ||      |   | ||     || | |||             
GTTTCAATTGGCCTTGTGGTTGCTTTGAATTATCACAACCCTTTCTTGAACCCTTATGAAGAATTCCAGgtaagtttatagtctttttgtaattaatgttctatatgtgttgtttctagtctttgtttatgttagaaagtattgggagtcaatataatatggaaatcat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116411359|gb|EG453951.1|EG453951
EST:     TTGCCTTGAACTACCACAACCCTTTCTTGAATCCGTATGAGGAATTTCAG                         AAACTCAAACACCATCCTGCTATTAAAGGCATCTTGGAAGGTGGTACCGTG
genomic: TTGCCTTGAACTACCACAACCCTTTCTTGAATCCGTATGAGGAATTTCAGgtatgtcaat ... ctccaaatagAAACTCAAACACCATCCTGCTATTAAAGGCATCTTGGAAGGTGGTACCGTG