Sequence
atgc intronic sequence ATGC exonic sequenceAACCGCCTCGTTGCACTCATCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATGTCACAAGGACTGgtaatactctcttctgtctgcctcaatccagctcatcagctatcaaaatatttcacactctcacatttgctcattttctgtgtttttgatttctttgctgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G40660.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G40660.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA06G14760.1 (Glycine max), 5'ss of exon 9
AACCGCCTCGTTGCACTCATCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATGTCACAAGGACTGgtaat-actctc-ttctgtctgcctcaatccagctcatcagctat-caaaatatttcacactctcaca-tttgctcattttctgtgtttttgatttctttgctgcag
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AATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTCAAGGATTGgtattgatgctcatactggttgcatttgctaaattgttttgctgtgtgtagcttttgatggtcaagtaatcttaaagggatatatgcatttggctccctt--tgcag
upper sequence: AT2G40660.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA04G40090.1 (Glycine max), 5'ss of exon 9
AACCGCCTCGTTGCACTCATCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATGTCACAAGGACTGgta---atactctcttctgtctgcctcaatccagctcatcagctat-caaaatatttcacactctcacatttgctcattttctgtgtttttgatt------tctttgctgcag
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AATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTGAAGGACTGgtattgatgctcattcttgt-tgcatgtgttaaatttttttgctgtgtgtagcttttgatggtcaagcaatcttaagggacatatgtatttggctccccgttcctctttacag
upper sequence: AT2G40660.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv13s0067g03060.t01 (Vitis vinifera), 5'ss of exon 9
AACCGCCTCGTTGCACTCATCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATGTCACAAGGACTGgtaatactctcttctgtctgcctcaatc-cagctcatcagctatcaaaatatttca-cactctcacatttgctcattttctgtgtttttgatttctttgctgcag
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AACCGTCGTGTTGTGCTAATCACAAATGTTAAACCTGGAAAGCTACGAGATGTGATGTCAGAAGGACTGgtaatcatttttcccttgtattatggttgtcagactttgctcatgtgtctgctttatcagtcaaataaagatgcatgtcatgtccagtttagttatgaaa-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86081840|gb|DR377599.1|DR377599EST: TCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATGTCACAAGGACTG GTTCTTTGTGCTTCAAGTGAAGATCACTCGGTGGTAGAGCCGTTGCTACCA
genomic: TCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATGTCACAAGGACTGgtaatactct ... tttgctgcagGTTCTTTGTGCTTCAAGTGAAGATCACTCGGTGGTAGAGCCGTTGCTACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACCGCCTCGTTGCACTCATCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATGTCACAAGGACTGgtaatactctcttctgtctgcctcaatccagctcatcagctatcaaaatatttcacactctcacatttgctcattttctgtgtttttgatttctttgctgcag
- - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - GAGATG