Sequence
atgc intronic sequence ATGC exonic sequenceGGCAGATTCTGCTGCTGTAGCTATCACAACAACAGATCTTGTAAGCAAGAGTGTTGCAGTTGAATCACAGgtaggtttaagaaacacgttgtatactctatttctagcattgatatctcttacaaaatttttgacattgctcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G37500.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G37500.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA10G05090.1 (Glycine max), 5'ss of exon 8
GGCAGATTCTGCTGCTGTAGCTATCACAACAACAGATCTTGTAAGCAAGAGTGTTGCAGTTGAATCACAGgtaggtttaagaa--acacgttgtatactctattt---ctagcattgatatctcttacaaaatttttgacattgctcag---------------------
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GGCAGATTCTGCAGCTGTGGCAATCACCACGACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGgtattacttgttactatttgttgctcacttgttttaagttgatacagctagtttgtatgtaactgttttataagcacacctttgacatttgtatggatgg
upper sequence: AT2G37500.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA13G19450.1 (Glycine max), 5'ss of exon 9
GGCAGATTCTGCTGCTGTAGCTATCACAACAACAGATCTTGTAAGCAAGAGTGTTGCAGTTGAATCACAGgtaggtttaagaaacacgttgtatactctatttctagcattgatatctct------tacaaaatttttgacattgctcag---------------------
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GGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGgtatttcttgttactattttttgctcacttgttttaa-gttgatacaactagtttgtatgtaactgttttattagcacacatacatatatagataaacgca
upper sequence: AT2G37500.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: PP1S90_220V6.2 (Physcomitrella patens), 5'ss of exon 10
GGCAGATTCTGCTGCTGTAGCTATCACAACAACAGATCTTGTAAGCAAGAGTGTTGCAGTTGAATCACAGgtaggtttaa-gaaacacgtt--------gtatactctatttc--tagc-attgatatctcttacaaa--atttttgacattgctcag------------
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GGCTGATGCCGCAGCCGTAGCCATCACAACTACTGATCTTGTCAGCAAGAGTGTTGCAATTGAAACGAAGgtatatctgttgtgattttttcatttcaagtattcctcattgtggtagcgattagtcattgtcgcagggcattataattattagacagatgagaatcacaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124921017|gb|EH994679.1|EH994679EST: CTATCACAACAACAGATCTTGTAAGCAAGAGTGTTGCAGTTGAATCACAG GTTGGTGGAATCAAAATTCGAGTTGGTGGTA
genomic: CTATCACAACAACAGATCTTGTAAGCAAGAGTGTTGCAGTTGAATCACAGgtaggtttaa ... cattgctcagGTTGGTGGAATCAAAATTCGAGTTGGTGGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCAGATTCTGCTGCTGTAGCTATCACAACAACAGATCTTGTAAGCAAGAGTGTTGCAGTTGAATCACAGgtaggtttaagaaacacgttgtatactctatttctagcattgatatctcttacaaaatttttgacattgctcag
- - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - GCAAGA