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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGCGGATGTGGGATGTGCTTCTCTTTGAAGGAAACCGTGTAGTGTTGTTCAGAACAGCATTTGCTATAATGGAACTATATGgtattttgctgatagaacttttgtatgtatcaagtgtgtgatgattgaattagctttgtggttcaaaggaaacaaaattttcagtcactctttgtatttccttag

Basic information

species Arabidopsis thaliana
transcript AT2G37290.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37290.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA10G05490.1 (Glycine max), 5'ss of exon 11
TTCTGCGGATGTGGGATGTGCTTCTCTTTGAAGGAAACCGTGTAGTGTTGTTCAGAACAGCATTTGCTATAATGGAACTATATGgtattttgctgatagaacttttgtatgtatcaagtgtgtgatgattgaattagc-tttgtggttcaaaggaaacaaaattttcagtcactctttgtat-ttccttag-----------------------------
|||| ||  | ||||||||||| || |||||||| ||||||||  || | ||  |||||||| | ||| |||||||| |||||||||||    |  | ||  |  ||| | ||| |   |||   |||   || |||| | |||   |   || |||| |||||   | | | | ||| ||| |||||||                              
TTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTATTTCGAACAGCACTGGCTCTAATGGAATTATATGgtattgaatt--ttgatttcctgtgtttatga---gtgatctgagcaaactagcatctgtaagt---agtaaactaaatta--aattattgtttatatcttccttaatgtaacacaatttttatctcgtattctag

upper sequence: AT2G37290.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv08s0040g03050.t01 (Vitis vinifera), 5'ss of exon 10
TTCTGCGGATGTGGGATGTGCTTCTCTTTGAAGGAAACCGTGTAGTGTTGTTCAGAACAGCATTTGCTATAATGGAACTATATGgtattttgctgatagaacttttgtatgta---tcaagtgtgtgatgatt---gaattagctttgt-----ggttcaaaggaaacaaaattttcagtcactctttgtatttccttag
|||| ||  | |||||||||||||| |||||||||||||||||  || | ||  | |||||| ||||| | |||||  |||||||||    |   |   |||||  || | |    ||    |    || | |    | ||| || |||     || |     ||  ||  |  |||  ||||  |   | ||    |||
TTCTTCGAGTTTGGGATGTGCTTCTATTTGAAGGAAACCGTGTTATGCTATTTCGGACAGCACTTGCTTTGATGGAGTTATATGgtacacagaaaaataaacttcagtgtctgaactctttggcacaataactcacaatttaactctgtttttaggctgttcagagccatgaaattctatcacattcaat-ttcttgtag