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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGCCCATGGTTCCTATCTATTTTTGTCAACATTATTCCTTGGGAATGCGgtgagttcttatgttatgtcaaaggaaggacataggaagtctttattttccttttcttagctgaagttgtattttcaatcttgttgtttttgagtccag

Basic information

species Arabidopsis thaliana
transcript AT2G37290.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37290.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA10G05490.1 (Glycine max), 5'ss of exon 10
TTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGCCCATGGTTCCTATCTATTTTTGTCAACATTATTCCTTGGGAATGCGgtgagttcttatgttatgtcaaaggaaggacatagga----agtctttattttccttttcttag---ctgaagttgtattttcaatcttgttgtttttgagtccag
||||||||||||||||||||||||||||||| |||||||| |||||  | ||||| ||||| || ||||| ||||| |||||||||||| | |||||| | ||||     || ||          ||  |    ||  || |||||   |||  ||    || || |  ||| ||    ||||||  | |  |    ||
TTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTGgtgagat-ttatacggagtgaatcttttcttttaatattacagcattgattttgaattttgtatattcttaaatgttatcttatgccttgtt--tctcaatcttag

upper sequence: AT2G37290.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv08s0040g03050.t01 (Vitis vinifera), 5'ss of exon 9
TTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGCCCATGGTTCCTATCTATTTTTGTCAACATTATTCCTTGGGAATGCGgtgagttcttatgttatgtcaaagga-aggacataggaagtctttat---tttccttt---tcttagctgaagttgtattttcaatcttgttgtttttga--gtccag----------------------------------
||| ||||||||||| ||| ||||||||||| || ||||||||||| || ||||| || || |||||||| || |||||||| |||||| | |||||| | ||   |||| | | ||   |  ||||    |  ||  ||   ||||||||   | ||   || |  | ||  |||| | |      |  |    ||| ||                                  
TTAGTCATCTGGATTGCTTAGGAGTGCAGGTGGCCTGGATCTCTGGACCTTGGTTTCTTTCCATTTTTGTGAATATTATTCCATGGGAAAGTGgtgaggt-ttgcattatataatagagcaatacattctgaaactgaatgaatttcctttaatttttctttgcatctctagattcattttgaacactcctagttgtcaagcatattaaccttgtaatggttcctttaacctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116398844|gb|EG441436.1|EG441436
EST:     GCCCCATGGTTCCTATCTATTTTTGTCAACATTATTCCCTTGGGAATGCG                         TTCTGCGGATGTGGGATGTGCTTCTCTTTGAA
genomic: GCCC-ATGGTTCCTATCTATTTTTGTCAACATTATTCC-TTGGGAATGCGgtgagttctt ... ttgagtccagTTCTGCGGATGTGGGATGTGCTTCTCTTTGAA
EST: gi|116398846|gb|EG441438.1|EG441438
EST:     TGGCCCATGGTTCCTATCTATTTTTGTCAACATTATTCCTTGGGAATGCG                         TTCTGCGGATGTGGGATGTGCTTCTCTTTGAAGGGAACCGTGTAGTGTTGT
genomic: TGGCCCATGGTTCCTATCTATTTTTGTCAACATTATTCCTTGGGAATGCGgtgagttctt ... ttgagtccagTTCTGCGGATGTGGGATGTGCTTCTCTTTGAAGGAAACCGTGTAGTGTTGT