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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGTGGCATGGGGTGAGGGACACAATTCGTGGGTAAGgttcttaaattggagtatagtgaattacgtatgtaagacaaacactacttgacttatgtgaaagcttcctcataggtaag

Basic information

species Arabidopsis thaliana
transcript AT2G37160.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37160.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA10G05890.1 (Glycine max), 5'ss of exon 10
-----AGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGTGGCATGGGGTGAGGGACACAATTCGTGGGTAAGgttc---ttaaattggagtatagtgaa---tta--cgtatgtaagacaaacacta--cttgacttatgtgaaagcttcctcataggtaag-----
     | ||  ||||||| ||||| || ||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| | |    |||  | || || |   ||   |||    | | ||  | ||  | ||   | |  | | |||| |  |  | ||   |||||     
TGGAAAATATATTTTGACGGGAGGAGAGGATGATTTAGTTCAAGTTTGGAGTATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACACAACTCATGGgtaagttgcatggtaatcttgactagacaaaaattttaattttttataccataagtaataaattagtatgaggtgagatttggcacaacagtaaggtttt

upper sequence: AT2G37160.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA19G36480.2 (Glycine max), 5'ss of exon 4
-----AGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGTGGCATGGGGTGAGGGACACAATTCGTGGGTAAGgttcttaaattggagtatagtgaattacgtatgtaagac--aaacactacttgacttatgtgaaagcttcctcatag-gtaag---
     | ||  ||||||| ||||| |||||||| || |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| || || ||||||||  |  |   ||    | | || |  | | | |   | ||      || ||  |||| ||||      |  |  ||   || |    
TGGAAAATATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACATAACTCATGGgtaag--ttgtgtgttaattttttgtcatgtgcttgtagcaaactttgctaccacaggactgatgtagtttgtgtcaaatgctgtgatcag

upper sequence: AT2G37160.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA13G20240.1 (Glycine max), 5'ss of exon 10
-----AGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGTGGCATGGGGTGAGGGACACAATTCGTGGGTAAGgttc---ttaaattggagtata-gtgaattacgtatgtaagacaaacactacttgacttatgtgaaagcttcctcataggtaag-------------
     ||||  ||||||| || || || ||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||| | |    |||  | || |  |    ||||   ||   | ||  || |  | | |  | | |||| |  || | ||   |||||             
TGGAAAGTATATTTTGACGGGGGGAGAGGATGATTTAGTTCAAGTTTGGAGTATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGGCACAACTCATGGgtaagttgcatgataatcttgactggacaaaaattttatac-catgagtaataa-attagtttgaggtgagattttgcacaacagtaaggttttgctatctt

upper sequence: AT2G37160.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA03G33740.2 (Glycine max), 5'ss of exon 9
-----AGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGTGGCATGGGGTGAGGGACACAATTCGTGGGTAAGgttcttaaattggagtatagtgaattacgtatgtaagaca--aacactacttgacttatgtgaaagcttcctcataggtaag---------------
     | ||  ||||||| ||||| |||||||| || |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| || || |||||||| | | | |       | ||||    | | | |   | ||      ||     |  | ||||      |   ||| | |  |                
TGGAAAATATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGCGAGGGACATAACTCATGGgtaagttgcctga--caatttttagttgtgtgcttgtagcaaactttgctaccgtagggttaatgtagtgtttgtatcaaatgccatgatcaggtcagtgga

upper sequence: AT2G37160.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 9
-----AGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGTGGCATGGGGTGAGGGACACAATTCGTGGGTAAGgttcttaaattggagtatagtgaattacgtatgtaagaca--aacactacttgacttatgtgaaagcttcctcataggtaag------
     | ||  ||||||| ||||| |||||||| || |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| || || |||||||| | | | |       | ||||    | | | |   | ||      ||     |  | ||||      |   ||| | |  |       
TGGAAAATATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGCGAGGGACATAACTCATGGgtaagttgcctga--caatttttagttgtgtgcttgtagcaaactttgctaccgtagggttaatgtagtgtttgtatcaaatgccatgatcag

upper sequence: AT2G37160.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 9
-----AGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGTGGCATGGGGTGAGGGACACAATTCGTGGGTAAGgttcttaaattggagtatagtgaattacgtatgtaagacaaacactact-tgacttatgtgaaagcttcctcataggtaag------
     | ||  |||||||||||||||| |||||  | |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||  |  ||   |  | | |  ||  |  | ||  |   | | |||  | | | || |   |||     |  | || | |         
TGGAAAATATATTTTGACTGGAGGTGAGGATGATCTAGTTCAAGTTTGGAGTATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACACAACTCTTGGgtaagtgttcta---tcaaatgtc-tgcttgtcata-atttcatagacatgattataaccttcatgattatcttttaatggatgtctgccag