1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGCTAGCGCAACAGCTACCTTTGTGATGATGTTTTCTTCGTCCTTATCCGTAGTCGAGTTCTATCTCCTCAAGAGATTCCCAATACCATACGgtaagatctctaacacacaacatgagatacatttagaagtcgtagcagaataaaaaggaaactgatgattgacctttgtttcattgacag
species | Arabidopsis thaliana |
transcript | AT2G36630.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTCCCAATACCATACG CAATGTACTTGATTTCGGTATCGATTCTTGCCGGTTTTTGGGGACAATCCTEST: gi|86073792|gb|DR369549.1|DR369549
genomic: TTCCCAATACCATACGgtaagatctc ... tcattgacagCAATGTACTTGATTTCGGTATCGATTCTTGCCGGTTTTTGGGGACAATCCT
EST: CTTATCCGTAGTCGAGTTCTATCTCCTCAAGAGATTCCCAATACCATACG CAATGTACTTGAT
genomic: CTTATCCGTAGTCGAGTTCTATCTCCTCAAGAGATTCCCAATACCATACGgtaagatctc ... tcattgacagCAATGTACTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCTAGCGCAACAGCTACCTTTGTGATGATGTTTTCTTCGTCCTTATCCGTAGTCGAGTTCTATCTCCTCAAGAGATTCCCAATACCATACGgtaagatctctaacacacaacatgagatacatttagaagtcgtagcagaataaaaaggaaactgatgattgacctttgtttcattgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA