1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGATGGGTTACAGAAAACGAATGAGCTCGTATTTGTTTTAGCAGCAACAAATCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGAgtatccttttacttactctcatagaacaaaaatgcttgtatcatgattttcttttgtttaggcctcaactagtgaaaccattag
species | Arabidopsis thaliana |
transcript | AT2G34560.1 |
intron # | 9 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: ATCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGA ATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATGEST: gi|124781826|gb|EH871769.1|EH871769
genomic: ATCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGAgtatcctttt ... aaaccattagATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATG
EST: TCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAAGAAACGA ATTCTTGTACCTTTACCGGATEST: gi|164097082|gb|EL984851.1|EL984851
genomic: TCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGA-GAAACGAgtatcctttt ... aaaccattagATTCTTGTACCTTTACCGGAT
EST: TGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGA ATTCTTGTACCTTTACEST: gi|86084400|gb|DR380159.1|DR380159
genomic: TGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGAgtatcctttt ... aaaccattagATTCTTGTACCTTTAC
EST: ATCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGA ATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATGEST: gi|125267983|gb|EL282068.1|EL282068
genomic: ATCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGAgtatcctttt ... aaaccattagATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATG
EST: ATGCAGCTATGCTCCGGCGTCTAGAGAAACGA ATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATG
genomic: ATGCAGCTATGCTCCGGCGTCTAGAGAAACGAgtatcctttt ... aaaccattagATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGGGTTACAGAAAACGAATGAGCTCGTATTTGTTTTAGCAGCAACAAATCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGAgtatccttttacttactctcatagaacaaaaatgcttgtatcatgattttcttttgtttaggcctcaactagtgaaaccattag
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