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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTgtaactcttgaacctacagccttctcgttttttcatatcttctcatgaaccctacgattaaaatattttttgacattttcatttcag

Basic information

species Arabidopsis thaliana
transcript AT2G34410.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os01g44040.1 (Oryza sativa), 5'ss of exon 9
TAAACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTgtaactcttgaa--cctaca---gccttctcgttttttcatatcttctcatgaaccctacgattaaaatattttttgacatt-ttcatttcag--------------------------------------------------------------------------------
 ||| || |  ||||||| || ||||| ||||| ||| |||| || ||||| || || |||||||| ||||||||||| |||||||| |||||||| | ||||| | || ||     |||   | ||  |  || ||| |||||     |    |  |    ||      || |    |||| || || |  |                                                                                
AAAAGCAAACTTACCACTGTTGCATGAGTGGCATTTCCGATCTGGCCTTGATCGTTATATATGGATTATTGGAATGATCTATGCCTACTTCCATCCAAATgtaagttttcaaggatcacagatgactgttttttatttgatatcactgtagagtctttgtccttctgcccttctccatcattgtttatgtaggatgcaattcattatgctatggtttcaggtatttttcttctatcagtagtagtgcttgaaatgtagatctctgtcatacag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 9
TAAACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTgtaactcttgaacctacag----ccttctcgttttttcatatcttctca--tgaaccctacgattaaaatattt-tttgacat-tttcatttcag--------------------------------------------------------------------------------
 ||  || |  |||| ||  ||||||| ||||| ||| |||| || ||||| || ||||||||||| ||||||||||| ||||| || ||||| || | ||||| |  |     ||  |     | | || |   ||   | || |     ||| |  |||   ||   | ||  ||| | |  |||| |   ||                                                                                
CAAGGCAAACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTTGATCGATACATATGGATTATTGGAATGATCTATGCTTACTTCCACCCTAATgtaagtaattcggttatggatccacatttcctccctttggaactgcatgagtgagcagtacatataccgtgttcctttcatacatttcttcctagggagttctctcttattttaagaatatgttccttgtttatactatatattaatgtagcatggaatccgctatctgaaatag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G076394_T01 (Zea mays), 5'ss of exon 9
TAAACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTgtaactctt-------gaacctacagccttctcgttttttcatatcttctcatgaaccctacgattaaaatat-tttttgacattttcatttcag-
|||     |  |||| || ||||| ||||||| |||| | || || ||||| || ||||||||||||||||||||||| ||||| || || || ||||  |||| | ||       ||||  |||  | |   || | || |    |||      |   |    | || ||   |   |   ||  | |   ||  
TAAGATGAACTTACCCCTGTTACACGAATGGCGCTTCCGCTCTGGCCTTGATCGTTACATATGGATCATTGGAATGATTTATGCTTACTTTCACCCCAACgtaagtgttctaaagagaactgacattcatggagtgtgttaagtgtttcctccttatgttgatctaaacatgcatgccttctatcctgacaacaag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G458538_T01 (Zea mays), 5'ss of exon 4
TAAACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTgtaactcttgaacctacagccttctcgttttttcatatcttctcatgaaccctacgattaaaatattttttgacat-tttcatttcag-------------------------------------------------------------------------------------
 ||  || |  |||| ||  ||||||| ||||| ||| |||| || || || || ||||||||||| ||||||||||| ||||| || |||||||| | ||||| | ||  |  ||  | | | |  |    | ||  |  |||    ||  ||      | || || || || |  | ||  |  |                                                                                      
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGGATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcagttatggacctatattaccctgatcacc-ctctgagactgtatctacgagatgttattggatacgtctcgatatattttccctaatctctatatatattaagcatcgtttcttttgttcagatcatgttaaccttaacatggagccttttgacgtaaacag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G463445_T01 (Zea mays), 5'ss of exon 4
TAAACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTgtaactcttgaacctacagccttctcgttttttcat-atcttctca--tgaaccctacga----tta--aaatattttttgacattttcatttcag----
 ||  || |  |||| ||  ||||||| ||||| ||| |||| || ||  | || ||||||||||| ||||||||||| ||||| || |||||||| | ||||| | ||  |  ||  | | | |  |    | || | | ||| |  |     || |||    |||    |||  | | || || ||      |     
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCAATCGATACATATGGATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcaaatatggacctatattaccctgatcaccctctgagattgtatctgcgagattttactggatacgtctcgatatattttccctaatcta

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
TAAACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTgtaactcttgaacctacagccttc----tcgttttttcata--tcttctcatgaaccctacgattaaaatatttt----ttgacatttt----catttcag
 || || || || || |   | ||||| ||||| |||||||| || ||||| |||||||| ||||| ||||||||||| ||||||||||| ||||| | ||||| ||| |||     ||| ||     | ||  ||   ||  | || | ||  |      | |  |  ||||||    |||| || ||    ||| ||||
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaa-tctcgaatac-tagcttttgtagtggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
TAAACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTgtaactcttgaaccta--cagccttctcgttttttcatatcttctcatgaaccctacgattaaaatatttt----ttgacatttt----catttcag
 || || || || || |   | ||||| ||||| |||||||| || ||||| |||||||| ||||| ||||||||||| |||||||| || ||||| | |||||      |  |||    |  |  | ||  ||   ||| || |    ||   |    |  |  ||||||    |||| || ||    ||| ||||
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgtaatctccaatactagcttgtgtggtggtcattgggtattttttttataatatt-tagtccagctattttaaatttgaaatatttcaccatctcag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 4
TAAACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTgtaactcttg--aacctacagccttctcgttttttcatatcttctcatgaaccctacgattaaaatattttttgacattttcatttcag
||||| ||  || || |   | ||||||||||| || ||||| || ||||| ||||| || |||||||| |||||||||||||||||||  || || | ||||| | ||   ||      |     |  |  ||| ||| ||  || |   || | | | |||    |   |  |  ||||  | | ||
TAAACAAGGTCTCCCTCGACTGCATGAATGGCATTTTAGATCTGGGCTTGATCGCTATATTTGGATCATCGGAATGATATATGCCTATTATCACCCTAATgtaatttttttcaagtattggtacaatgatgattttatagctcttctttctccgt-ccactaactggtaaatatattttttgttcttag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: PP1S357_34V6.1 (Physcomitrella patens), 5'ss of exon 9
TAAACCAGAACTACCACTT-TTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTgta-----------actcttgaacctacagccttctcgttttttcat-atcttctcatgaaccctacgattaaaatattttttgacattttcatttcag-
 ||| ||   |   | |||  | |||||||||||||||||||||||||| || || ||||| |||||  | || ||| | ||||| ||||| ||||| || |||           ||| |||   | | ||      ||| |  | ||  | |      | | | |    |  |   | ||| || |||| |  |      
-AAAGCACCCCACTCCCTTGCTGCATGAATGGCACTTCAGATCAGGACTGGATCGATACATCTGGATTGTGGGCATGCTCTATGCGTATTTTCATCCTACGgtattaacatttggacttttgtttcgaaagaaaagacgtatagttatcgtttgagttcgcagcatgttgtgtactaagtttctggcattcttgtcatgac