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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCAGATACGGACCATATTGACAGGTTGATATCATGCCTGCAACTGGCTCTTCCCTTTTTTGCGgtatgaactcagaataagtgctgctagtagctggatagagtccattttataaacttgactggttgtcttactaactttccgttcctctgaacag

Basic information

species Arabidopsis thaliana
transcript AT2G34040.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G34040.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA13G24090.2 (Glycine max), 5'ss of exon 8
TTTTCAGATACGGACCATATTGACAGGTTGATATCATGCCTGCAACTGGCTCTTCCCTTTTTTGCGgtatgaactcagaataagtgctgctagtagctggatagagtccattttataaacttgactggttgtcttactaactttccgttcctctgaacag
 | |||||| | || |||||||||||||||||||||||||| ||  |||| ||||| ||| | | |||| | |||     |   | ||| |  |   |    | | |   || | | || ||   |  |   |  | | | |||    ||||   |    
GTATCAGATGCAGATCATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTGgtaaggact----gtttatactgtttatcttttctcatattgttttctgtcaagttttttcttcaacagaatcatttttttctccttgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164157907|gb|EL994145.1|EL994145
EST:     ATATCATGCCTGCAACTGGCTCTTCCCTTTTTTGCG                         AGAGGTGCTCCAAGCAGCAGGTTTCTTATCTATTTGAACAAACATATCATA
genomic: ATATCATGCCTGCAACTGGCTCTTCCCTTTTTTGCGgtatgaactc ... ctctgaacagAGAGGTGCTCCAAGCAGCAGGTTTCTTATCTATTTGAACAAACATATCATA
EST: gi|125053075|gb|EL124428.1|EL124428
EST:     TATTGACAGGTTGTATATCATGCCTGCAACTGGCTCTTCCCTTTTTTGCG                         AGAGGTGCTCCAAGCAGCAGGTTTCTTATCTA
genomic: TATTGACAGGTTG-ATATCATGCCTGCAACTGGCTCTTCCCTTTTTTGCGgtatgaactc ... ctctgaacagAGAGGTGCTCCAAGCAGCAGGTTTCTTATCTA