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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGACTTGGCTTCTTACATTTCCCTTAATCAgtaagatttgaactcctttgtaccgcatcatttatgcctcattctccatctaacttctcttacaaaatgttccag

Basic information

species Arabidopsis thaliana
transcript AT2G32430.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA13G38500.1 (Glycine max), 5'ss of exon 9
ATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGACTTGGCTTCTTACATTTCCCTTAATCAgtaag-atttgaactcctttgt-----accgcatcatttatgcctcattctccatctaacttctcttacaaaatgttccag--------------------------------------
| ||||||||||| |||  |||||||||||||||||| ||||| ||||||||||| || |||||||| | |||  ||||| | || |||||   |||  ||| ||   || | |||  ||||     |    |  ||| |   |  |||      ||||  |        |||||||                                          
ACTGGAAATTTGGAGAGGCTGGAAACAAGTACTTCCGCCACGCCACTGGACAGTTGTATGCCATTTCAAAAGATCTGGCTACATATATTTCAAATAACAAgtgagtgcttcatctcacttgtggggaaaaaaacaattaaaatcaaatttatggactaaaatggtggtagaaatgttgtgatccacatgattgcttatttgtgtatttctttgtctcag

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA12G31980.1 (Glycine max), 5'ss of exon 9
ATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGACTTGGCTTCTTACATTTCCCTTAATCAgtaag-atttgaactcctttgtaccgca-----tcatttatgcctcattctccatctaacttctcttacaaaatgttccag-------------------------------------
| ||||||||||| |||   ||||||||||||||||| ||||| || |||||||| || |||||||| | |||  ||||| | || |||||   |||  ||| ||   || | |||  ||||   | |       ||| |     ||||      ||||  |        |||| ||                                         
ACTGGAAATTTGGAGAGGCCGGAAACAAGTACTTCCGCCACGCCACAGGACAGTTGTATGCCATTTCAAAAGATCTGGCTACATATATTTCAAATAACAAgtgagtgcttcatctcacttgtgggggaaaaagcaattaaaataacatttatggactaaaatggtggtgcaaatattgtgatccacatgatggcttattgtgcatgtctttgtctcag

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 9
ATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGACTTGGCTTCTTACATTTCCCTTAATCAgtaagatttgaac--tcctttgtaccgcatcatttatgcctcattctccatct-----aacttctcttacaaaatgttccag------------------
| ||||||||||| |||  |||||||| |||||||||||| || || || ||||| || |||||||| |  || |||||| | ||||| ||  |||| |||||||   |      ||     || |  |  |   | |  | |   | | | |     || ||    || ||    ||  ||                  
ACTGGAAATTTGGAGAGGCTGGAAACAGGTACTTCCGTCATGCCACAGGGCAGTTGTATGCCATTTCGAATGATTTGGCTACATACATATCAATTAACCAgtaagtcctacttcatctcacttatcagagaaaaaaaggataagggtacgtttgagtaaattttatctaaaaggatttttaggagaaaaaaataagaaga

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 9
ATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGACTTGGCTTCTTACATTTCCCTTAATCAgtaagatttgaactcc--tttgtaccgcatcatttatgcctca-----ttctccatctaacttctcttacaaaatgttccag------------------------------------
|||||||||||||||||   |||||||| || |||||||||||||| |||||| |||| |||||||| | ||| ||||||   || || ||  | || ||||||| ||| |  | |  |||  |  |  | |   | |  |||     ||||     | |  | | | | || ||  ||                                       
ATTGGAAATTTGGTGAGGCAGGAAACAAATATTTCCGTCACGCTACAGGACAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCAgtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcctcttccactttttatggttattttgtacatgattattgcag