1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTCATGGCTGATAGGATCATCGGCATGAGAACTACTTTGCGAGAAAGCCTTGAGAAGTTAGGATCGCCTTTGTCATGGGAGCACGTTACCAAACAGgtaactacaacaacaaaataggcttcttttgtgaaattcttgttatttctctcctttgactcacacagtcatatctttatggtgataacag
species | Arabidopsis thaliana |
transcript | AT2G30970.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCCTTGAGAAGTTAGGATCGCCTTTGTCATGGGAGCACGTTACCAAACAG ATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTAEST: gi|86044680|gb|DR340435.1|DR340435
genomic: GCCTTGAGAAGTTAGGATCGCCTTTGTCATGGGAGCACGTTACCAAACAGgtaactacaa ... gtgataacagATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTA
EST: GCCTTGAGAAGTTAGGATCGCCTTTGTCATGGGAGCACGTTACCAAACAG ATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTAEST: gi|86079557|gb|DR375314.1|DR375314
genomic: GCCTTGAGAAGTTAGGATCGCCTTTGTCATGGGAGCACGTTACCAAACAGgtaactacaa ... gtgataacagATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTA
EST: GCCTTGAGAAGTTAGGATCGCCTTTGTCATGGGAGCACGTTACCAAACAG ATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTAEST: gi|86044669|gb|DR340424.1|DR340424
genomic: GCCTTGAGAAGTTAGGATCGCCTTTGTCATGGGAGCACGTTACCAAACAGgtaactacaa ... gtgataacagATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTA
EST: GCCTTGAGAAGTTAGGATCGCCTTTGTCATGGGAGCACGTTACCAAACAG ATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTAEST: gi|125257296|gb|EL271381.1|EL271381
genomic: GCCTTGAGAAGTTAGGATCGCCTTTGTCATGGGAGCACGTTACCAAACAGgtaactacaa ... gtgataacagATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTA
EST: GCCTTGAGAAGTTAGGATCGCCTTTGTCATGGGAGCACGTTACCAAACAG ATTGGAATGTTCTGCTACAGTGGGTTAACACCAGGACAGGTTGACCGCTTA
genomic: GCCTTGAGAAGTTAGGATCGCCTTTGTCATGGGAGCACGTTACCAAACAGgtaactacaa ... gtgataacagATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATGGCTGATAGGATCATCGGCATGAGAACTACTTTGCGAGAAAGCCTTGAGAAGTTAGGATCGCCTTTGTCATGGGAGCACGTTACCAAACAGgtaactacaacaacaaaataggcttcttttgtgaaattcttgttatttctctcctttgactcacacagtcatatctttatggtgataacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA