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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcactttctcctgattagaaatctttcagctcacattcaatgcaatccatttcctaacatcaacatgcttaatttcaatgcaagccatttcctaatcattgaggctcttgatgtttggttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G30970.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G30970.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os02g14110.1 (Oryza sativa), 5'ss of exon 9
ATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcactttctcctgattagaaatctttcagctcacattcaatgcaatccatttcctaacatcaacatgcttaatttcaatgcaagccatttcctaatcattgaggctcttgatgtttggttgcag
|||||||||||||||||||||||| | ||||| |||||||| || |||||||| |  ||||| || || || ||||||||||| ||| | || ||||||   |      | |  ||||   | |||||  |  |      || ||||  | |  |||    || |     ||| | | |    | |||||| |  |||                          
ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAACCAATGAATACCATATTTACATGACCCGTAATGGCAGAATAAGgtacaataacagtactt--ttag---tttttcatgttgc------tg-aatctttgttttaat-cgaataaa---aatctaactttctgtcatttctt--tcag-------------------------

upper sequence: AT2G30970.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G146677_T01 (Zea mays), 5'ss of exon 9
ATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcactttctcctgattagaaatctttcagctcacattcaatgcaatccatttcctaacatcaacatgcttaatttcaatgcaagccatttcctaatcattgaggctcttgatgtttggttgcag
|||||||||||||||||||||||| | ||||| ||||| |||||||| |||||||  ||||| ||||| || |||||||| || ||  | || |||||   || || ||   ||||     | ||| |  ||||  |  || || |  |     ||  |  ||      ||| ||||   |  |||   |   |                              
ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAAGTTGACCGTTTAACAAATGAATACCACATTTACATGACCCGCAATGGGAGGATAAGgtatagcaattact---gatt-----ttttttacatcacgat-gattcattgaacagtttattag-aatgaatctaacttcatcccttgcccaatttcag-----------------------------

upper sequence: AT2G30970.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA06G42830.1 (Glycine max), 5'ss of exon 9
ATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcactttctcctgattagaaatctttcagctcacattcaatgcaatccatttcctaacatcaacatgcttaatttcaatgcaagccatttcctaatcattgaggctcttgatgtttggttgcag
||||| ||||||||||||||||| || ||||| ||||||||||| ||  | |||| ||| | ||| || || |||||||||||||| ||||||||||| || |    | |    ||     ||||||  ||  ||||   | |  | || | |   |     | | | | ||  |    | |    | |   |  | |   |  |  ||||| ||   || |||
ATTGGTATGTTCTGCTACAGTGGATTGACACCTGAACAGGTTGATCGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaatt-ataaacccaatcttctgtttctttccactatcatt---ttccttacactgcaagatcctgaga-gatgaagatagtaggattttactgttttcttac--atacatttgattttatattacag

upper sequence: AT2G30970.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv12s0028g01820.t01 (Vitis vinifera), 5'ss of exon 9
ATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcactttctcctgattagaaatctttcagct-cacattcaatgcaatccatttcctaacatcaacatgcttaatttcaatgcaagccatttcctaatcattgaggctcttgatgtttggttgcag
||||| ||||||||||||||||| || ||||| ||||||||||| ||  | ||||  |||| ||| ||||| ||||| || || || || ||||||||        | |||||  | ||| | ||||   |   | |  | |    | |  || ||   |     || ||||  |   | |  |   | |   ||                              
ATTGGCATGTTCTGCTACAGTGGTTTGACACCTGAACAGGTTGATCGAATGACAAATGAATTTCATATCTACATGACTCGCAATGGTCGCATCAGgtaaa-----gtttcctgcattgaagtatttcttttgtgcttgtatttttgttctctttctgtgaattggattcttatctaacacgtgaaaaaatgtgtacag---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86044665|gb|DR340420.1|DR340420
EST:     CGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAG                         TATGGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACA
genomic: CGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcact ... ttggttgcagTATGGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACA
EST: gi|164095668|gb|ES031330.1|ES031330
EST:     CGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAG                         TATGGCTGGTGTTACAACAGGA
genomic: CGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcact ... ttggttgcagTATGGCTGGTGTTACAACAGGA
EST: gi|124892201|gb|EH971103.1|EH971103
EST:     CTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAG                         TATGGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACA
genomic: CTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcact ... ttggttgcagTATGGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACA
EST: gi|125267153|gb|EL281238.1|EL281238
EST:     GCTTAACAAGCGAATATCACATCTATTATGACCCGTAACGGCCGTATCAG                         TATGGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACA
genomic: GCTTAACAAGCGAATATCACATCTA-TATGACCCGTAACGGCCGTATCAGgtacttcact ... ttggttgcagTATGGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACA
EST: gi|116440949|gb|EG483541.1|EG483541
EST:     CGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAG                         TATGGCTGGTGTTACAACAGGAAACGGGGGATACCTTGGGAATGCTATACA
genomic: CGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcact ... ttggttgcagTATGGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACA
EST: gi|86079557|gb|DR375314.1|DR375314
EST:     CGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAG                         TATGGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACA
genomic: CGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcact ... ttggttgcagTATGGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACA
EST: gi|125311543|gb|EL325628.1|EL325628
EST:     CGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAG                         TATGGCTGGTGTTACAACAGGAAAC
genomic: CGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcact ... ttggttgcagTATGGCTGGTGTTACAACAGGAAAC
EST: gi|86044669|gb|DR340424.1|DR340424
EST:     CGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAG                         TATGGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACA
genomic: CGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcact ... ttggttgcagTATGGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACA
EST: gi|124854883|gb|EH939320.1|EH939320
EST:     ATATCACATCTATATGACCCGTAACGGCCGTATCAG                         TATGGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACA
genomic: ATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcact ... ttggttgcagTATGGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACA
EST: gi|124771426|gb|EH861556.1|EH861556
EST:     GCTTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAG                         TATGGCTGGTGTTACAACAGGAAACGTGGGA
genomic: GC-TTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcact ... ttggttgcagTATGGCTGGTGTTACAACAGGAAACGTGGGA