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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACGgtaagcaaacactgaatcgaatataacttgcgttggtcttgaaaatgttttcttctataaaccacgagaatcaaatacaagttgtttctgtaaacaatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G30710.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G30710.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA13G42180.1 (Glycine max), 5'ss of exon 9
CCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACGgtaagcaaacactgaatcga--atataacttgcgttggtcttgaaaat---gttttcttctataaaccacg-agaatcaaatacaagttgtttctgtaaacaatgcag
 || ||| ||||  ||| ||| || |||||||| ||||| |||||||||||||| || ||||||||||| |||||||||| ||| || |||||  | ||||| ||| | |  |   | |    | | ||     |  ||  |   |||    |||  | || ||    |   | |      ||  | |||||  |  |          
ACCCTTCCATCTTGTCACTCGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAACGgtgagccagc-ttacgttggtcttttcaccaatataagttatttgaatcgaatttcatcctgtagctaatatacagaggggtagtatttgttggtccattt-------

upper sequence: AT2G30710.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA11G13330.1 (Glycine max), 5'ss of exon 9
CCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACGgtaagcaaacactgaatcgaatataacttgcgttggtcttgaaaatgttttcttctataaaccacgagaatcaaatacaagttgtttctgtaaacaatgcag
 |||||| |||||||||  || || |||||||| ||| | |||||||||||||| || ||||||||||| || ||||||| ||| ||||| ||  | ||||| ||| |||  |   | | || |  ||     |    |||||     |||| | |   | |   |   ||       |   | | |  || ||      | 
ACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGgtgagctaactttccttggcatttt-ctcataatctatttgaattcaatttcatattgtagctgtgctgattgtgagtagtctttgttggtcaatttgtta-

upper sequence: AT2G30710.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA12G05350.1 (Glycine max), 5'ss of exon 10
CCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACGgtaagcaaacactgaatcgaatataacttgcgttggtcttgaaaatgttttcttctataaaccacgagaatcaaatacaagttgtttctgtaaacaatgcag
 |||||| |||||||||  || || |||||||| ||| | |||||||||||||| || ||||||||||| || ||||||| ||| ||||| ||  | ||||| ||| | |  |   | | || |  |      |    |||||  || ||  |  | ||  |   |   ||     | |   | | |  || ||      | 
ACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGgtgagctagcttttcttggcatttt-cacataatctatttgaatttgattcatcttgtag-ctgtgctgattgtgaatagtctttattggtcaatttgttaa

upper sequence: AT2G30710.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA15G03200.1 (Glycine max), 5'ss of exon 9
CCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACGgtaagcaaacactgaatcga--atataacttgcgttggt--cttgaaaatgttttcttctataaaccacgagaatcaaatacaagttgtttctgtaaacaatgcag
 || ||| ||||  |||  || || |||||||| ||||| |||||||||||||| || ||||| ||||| |||||||||| ||| || |||||  | ||||| ||| | |  |   | |    | | ||     |  ||   |||||     |||| ||    | | |  | |   | ||  |   | ||| |     || ||   
ACCCTTCCATCTTGTCACACGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAACGgtgagccagc-ttactttggtcttttcaccaatataagttatttgaatcaaatttcatcctgtagctaatataccgatatgtag--tatttgttggtccattg---

upper sequence: AT2G30710.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 9
CCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACGgtaagcaaacactgaatcgaatataacttgcgttggtcttgaaaatgttttcttctataaaccacgagaatca-aatacaagttgtttctgtaaacaat-gcag
 || ||||||||  | |  || || |||||||| |||||||| || ||||||||||||||||| ||||| |||||||||| ||| || ||||| || ||||| || | |  || |||    | |  |||  | || |    |  |      ||      ||    | |   || |     |    | |  ||||| | | ||  
ACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAACGgtgag-atatgcttaat--gctcttccttatgctgtttggtaggagaaaaactgaagacaagtgtgtgttccatagctttatcaatatgagtaaaaacttgct-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125133947|gb|EL175142.1|EL175142
EST:     ATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACG                         TGGTCTGATGAGCTGAAGAAGCTAGATTTTCAAGAAA
genomic: ATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACGgtaagcaaac ... aacaatgcagTGGTCTGATGAGCTGAAGAAGCTAGATTTTCAAGAAA
EST: gi|86086042|gb|DR381801.1|DR381801
EST:     ATGCGTTGCCAGACTTCCTGGTG--TATATATGCTAGCTTTCTCTTGACG                         TGGTCTGATGAGCTGAAGAAGCTAGATTTTCAAGAAATGGTAATGTTCCTG
genomic: ATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACGgtaagcaaac ... aacaatgcagTGGTCTGATGAGCTGAAGAAGCTAGATTTTCAAGAAATGGTAATGTTCCTG