1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGACATCTCCAGTCCAATGGGAGACAACAGTAAAGACTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttctatcttcgtaaactcattatagatggaggtttcttcttcttcttctaagttgtgtgttttgtggcattcaaacaccag
species | Arabidopsis thaliana |
transcript | AT2G30200.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTCTCTTATCCAAAGGACTTCAAAGCAGCTACGAATTGGGACCTGGAAAG GTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAACEST: gi|116401255|gb|EG443847.1|EG443847
genomic: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttct ... caaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
EST: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAG GTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAACEST: gi|116378971|gb|EG421563.1|EG421563
genomic: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttct ... caaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
EST: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAG GTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAACEST: gi|116476496|gb|EG519088.1|EG519088
genomic: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttct ... caaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
EST: CTTTTTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAG GTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAACEST: gi|86074247|gb|DR370004.1|DR370004
genomic: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttct ... caaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
EST: CTCTCTTATCCAAAGGACTTCAAAGCAGCTACGAATTGGGACCTGGAAAG GTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAACEST: gi|116476495|gb|EG519087.1|EG519087
genomic: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttct ... caaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
EST: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAG GTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAACEST: gi|124709885|gb|EH801287.1|EH801287
genomic: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttct ... caaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
EST: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAG GTAATTGCAGGGATATTCAAGAGAGTAGATAAAAG
genomic: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttct ... caaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACATCTCCAGTCCAATGGGAGACAACAGTAAAGACTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttctatcttcgtaaactcattatagatggaggtttcttcttcttcttctaagttgtgtgttttgtggcattcaaacaccag
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