1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAGGTGGTGCAAAGCCAAATATGGATGAAAACGCAAGCAAAATAATAAGTGCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAGgtaagtgaatcccgagtctagtggagattatatctctcaatacgaagcgtttttcttacaagtttgttatttctgataaatgtatattggatcacaacag
species | Arabidopsis thaliana |
transcript | AT2G28800.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAG ATTTAGACAATTAAAAGAGCAAGAGAAGCGCAEST: gi|86079787|gb|DR375544.1|DR375544
genomic: GCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAGgtaagtgaat ... atcacaacagATTTAGACAATTAAAAGAGCAAGAGAAGCGCA
EST: GCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAC ATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGTEST: gi|164175673|gb|ES065146.1|ES065146
genomic: GCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAGgtaagtgaat ... atcacaacagATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGT
EST: CTGACGATGCTGGCGAAAG ATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGTEST: gi|86079035|gb|DR374792.1|DR374792
genomic: CTGACGATGCTGGCGAAAGgtaagtgaat ... atcacaacagATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGT
EST: GCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAC ATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGTEST: gi|125137502|gb|EL177357.1|EL177357
genomic: GCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAGgtaagtgaat ... atcacaacagATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGT
EST: CAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAG ATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGA
genomic: CAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAGgtaagtgaat ... atcacaacagATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGGTGGTGCAAAGCCAAATATGGATGAAAACGCAAGCAAAATAATAAGTGCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAGgtaagtgaatcccgagtctagtggagattatatctctcaatacgaagcgtttttcttacaagtttgttatttctgataaatgtatattggatcacaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG