Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATCAGAATCTTTCTCACCAATCTGCCTACCAAGATACAACGCTCAGGCCTTTTTGCATGCCTATGTCCACTTCTTTGATgtgagtcaaatacttgtaaagagcttcttaaattcatccacagtgcacaatgtgaaatattaacttactcgatggtgtag

Basic information

species Arabidopsis thaliana
transcript AT2G28390.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28390.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 9
GACATCAGAATCTTTCTCACCAATCTGCCTACCAAGATACAACGCTCAGGCCTTTTTGCATGCCTATGTCCACTTCTTTGATgtgagtcaaatacttgtaaagagcttctt---------aaattcatccacagtgcacaatgtgaaatattaacttactcgatg-gtgtag-----------
|||||| ||||||||||||||||| ||||| |||||||| ||  |   ||| |||||  |||| |||||||| |   |||||||||||   |||  | | ||   ||||||         | | |||| ||  |   ||  | |   || |    | | |   ||  | |||           
GACATCCGAATCTTTCTCACCAATTTGCCTGCCAAGATATAATCCCATGGCATTTTTATATGCTTATGTCCATTATCTTGATgtgagtgggatatgtctcaaagacttctttttcttctcatactcattcaatgcttaccttcttggat-tctgttcagttattgcatttagtcttgggactg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164202816|gb|ES174986.1|ES174986
EST:     CAAGATACAACGCTCAGGCCTTTTTGCATGCCTATGTCCACTTCTTTGAT                         GATGATACATATGTAATATTGCTTACCAC
genomic: CAAGATACAACGCTCAGGCCTTTTTGCATGCCTATGTCCACTTCTTTGATgtgagtcaaa ... gatggtgtagGATGATACATATGTAATATTGCTTACCAC