1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGCGGAAATTCTAATTGGAGGGGCAAAGGGTCCACCTGATAAGgttagtcttattccataggggtacacaatctgaacacaattccattatttagctttgaatgagagattggtggaaccgaaagatgtaaataaggtagtgtttatgtggaaacgggttttggtgcag
species | Arabidopsis thaliana |
transcript | AT2G25910.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTTGCAACGCGGAAATTCTAATTGGAGGGGCAAAGGGTCCACCTGATAAG ATATTTGTGATTGGACCGGTGAGAGAAGTGCGTAAGGCGGAGGCTATAEST: gi|86035179|gb|DR330932.1|DR330932
genomic: CTTGCAACGCGGAAATTCTAATTGGAGGGGCAAAGGGTCCACCTGATAAGgttagtctta ... tttggtgcagATATTTGTGATTGGACCGGTGAGAGAAGTGCGTAAGGCGGAGGCTATA
EST: CAGCGCGGAAATTCTAATTGGAGGGGCAAAGGGTCCACCTGATAAG ATATTTGTGATTGGACCGGTGAGAGAAGTGCGTAAGGCGGAGGCTATACTG
genomic: C-GCG-G-AAATTCTAATTGGAGGGGCAAAGGGTCCACCTGATAAGgttagtctta ... tttggtgcagATATTTGTGATTGGACCGGTGAGAGAAGTGCGTAAGGCGGAGGCTATACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGGAAATTCTAATTGGAGGGGCAAAGGGTCCACCTGATAAGgttagtcttattccataggggtacacaatctgaacacaattccattatttagctttgaatgagagattggtggaaccgaaagatgtaaataaggtagtgtttatgtggaaacgggttttggtgcag
- - - - - - - TTGGAG
- - - - - - - TGGAGG
- - - - - - - - - - - GCAAAG