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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCCAAGTCTGCCCCTTCTGATCAGTCCCGGATTAATCTCCTTGACTCAAAAGATgtaagtaaaatgaactcactcatgttctttgtatgtgttcttgttctgctactaaatccatttctcatccctcctttcgaaaatag

Basic information

species Arabidopsis thaliana
transcript AT2G25840.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25840.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os01g54020.1 (Oryza sativa), 5'ss of exon 11
ATGTCCAAGTCTGCCCCTTCTGATCAGTCCCGGATTAATCTCCTTGACTCAAAAGATgtaagta-------aaatgaactcactcatgttctttgtatgtgttcttgtt--ctgctactaaatcc-atttctcatccctcctttcgaaaatag----
||||| |||||||| ||||| |||||||| || ||||| || |||||  |||||||||||||         || |||| || || ||||  || |||  | |  |   |  ||  ||  ||||   ||| | |   |      | |||  |      
ATGTCGAAGTCTGCTCCTTCAGATCAGTCTCGTATTAACCTTCTTGATCCAAAAGATgtaagggcaccaagaattgaattccctgatgtgtttcgtaaatatagtgcataactaatatcaaattttattacgctagcacatggtagaaggtgcattt

upper sequence: AT2G25840.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G177970_T03 (Zea mays), 5'ss of exon 10
ATGTCCAAGTCTGCCCCTTCTGATCAGTCCCGGATTAATCTCCTTGACTCAAAAGATgtaag----taa----aatgaactcactcatgttctt-tgtatgtgttcttgttctgctactaaatccatttctcatccctcctt--tcgaaaatag----------------------------
|||||||||||||| ||||| || ||||| || ||||| || |||||| |||||||||||||    |||    |||||  | | |    | ||  ||  | |||  || |    || | | | |   |||  ||   ||  |  | | |  ||                             
ATGTCCAAGTCTGCTCCTTCAGACCAGTCTCGTATTAACCTTCTTGACCCAAAAGATgtaaggatctaaggataatgatatgaattgaatcctcatgcctctgtatttttataacttcaacaacatgttcgtatatttctgtgattggatttattcttatatcgctttctgcattttggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124952173|gb|EL027465.1|EL027465
EST:     CTGATCAGTCCCGGATTAATCTCCTTGACNCAAAAGAT                         TTGATTGTGGACAAGATAAAACGGTGCAAGACAGACTCATTTGCTGG
genomic: CTGATCAGTCCCGGATTAATCTCCTTGACTCAAAAGATgtaagtaaaa ... tcgaaaatagTTGATTGTGGACAAGATAAAACGGTGCAAGACAGACTCATTTGCTGG