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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTTGACCTCGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACTTCAATGGCAGgtacacagctcaaaaaccctgcagaaaaactcaatctttgtgtcgtttttgagtccaaaattggctcatgatgatcattctgtgttcattacttgatag

Basic information

species Arabidopsis thaliana
transcript AT2G24200.3
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829652|gb|CK119336.1|CK119336
EST:     CGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACTTCAATGGCAG                         GAATCTATACACCTAGCGACGAGCTTGCAAAGGAAGTGATTGCTGCATCAG
genomic: CGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACTTCAATGGCAGgtacacagct ... tacttgatagGAATCTATACACCTAGCGACGAGCTTGCAAAGGAAGTGATTGCTGCATCAG
EST: gi|164075304|gb|ES046646.1|ES046646
EST:     GTTATTGCTCTTGGAACTTCAATGGCAG                         GAATCTATACACCTAGCGACGAGCTTGCAAAGGAAGTGATTGCTGCATCAG
genomic: GTTATTGCTCTTGGAACTTCAATGGCAGgtacacagct ... tacttgatagGAATCTATACACCTAGCGACGAGCTTGCAAAGGAAGTGATTGCTGCATCAG
EST: gi|124986648|gb|EL059154.1|EL059154
EST:     GGAACTTCAATGGCAG                         GAATCTATACACCTTAGCGACGAGCTTGCAAAGGAAGTGATTGCTGCATCA
genomic: GGAACTTCAATGGCAGgtacacagct ... tacttgatagGAATCTATACACC-TAGCGACGAGCTTGCAAAGGAAGTGATTGCTGCATCA
EST: gi|86087145|gb|DR382904.1|DR382904
EST:     CGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACTTCAATGGCAG                         GAATYTATACMCCTAGCGACGAGCTTGCAAAGGAAGTGATTGCTGCATCAG
genomic: CGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACTTCAATGGCAGgtacacagct ... tacttgatagGAATCTATACACCTAGCGACGAGCTTGCAAAGGAAGTGATTGCTGCATCAG