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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCACTATATTGGAGTACATTCCCGGCATTGTGTAGACGAGGCTGAGGTGGCTGACCATGTTGTTCGGTTAACAAGTAGTCTGGCCCATTGCCAAGTCAGgtattgatatctatgctatttcaattttgtttccaaagattttgattcgatatgatgcccagtggaaattccattttcttgatgaccttgattctgaagcaaaactgtctgatgcgcag

Basic information

species Arabidopsis thaliana
transcript AT2G21800.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21800.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA08G15310.1 (Glycine max), 5'ss of exon 8
CTCACTATATTGGAGTACATTCCCGGCATTGTGTAGACGAGGCTGAGGTGGCTGACCATGTTGTTCGGTTAACAAGTAGTCTGGCCCATTGCCAAGTCAGgta-ttgatatctatgctatttcaattttgtttccaaagattttgattcgatat-gatgcccagtggaaattccattttcttgatgaccttgattctgaagcaaaactgtctgatgcgcag
|| | |  |    |||||| ||| |||| ||| |||||||||||||| ||||||| ||||||||  | || ||| |||| || ||   ||| ||  | ||||| |||||   | |  |  || ||||    | |     || |||    || |  | |      || |||    |||||     | |      || ||   |||||               
CTAATTTCAACAAAGTACACTCCAGGCAGTGTTTAGACGAGGCTGAGCTGGCTGAACATGTTGTCAGTTTGACATGTAGCCTAGCATCTTGTCAGTTTAGgtacttgatgcttgtatt--tttaattagagtccagtcaatcttggaaggaaaaaggttttatatgcaaaa---attttacatgtaaaaccagttgtg---caaaatc-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088101|gb|DR383860.1|DR383860
EST:     GCTGACCATGTTGTTCGGTTAACAAGTAGTCTGGCCCATTGCCAAGTCAG                         GAAGAAGTTAACTCGGTTATCAGTATACGCTGATGGTACATTAATGTCCAA
genomic: GCTGACCATGTTGTTCGGTTAACAAGTAGTCTGGCCCATTGCCAAGTCAGgtattgatat ... tgatgcgcagGAAGAAGTTAACTCGGTTATCAGTATACGCTGATGGTACATTAATGTCCAA