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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTCCGGAAAGAAAATATGTTATGTTCAGTTTCCTCAGAGGTTTGATGGGATTGATAGACACGATCGATACTCAAATCGCAATGTGGTTTTCTTCGATgtatgatttccatggaatttgtctttgcgttgttctatttatgttacagctcccttctcattggtgtctctatgattataaacag

Basic information

species Arabidopsis thaliana
transcript AT2G21770.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21770.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM5G840940_T01 (Zea mays), 5'ss of exon 1
GCAGTCCGGAAAGAAAATATGTTATGTTCAGTTTCCTCAGAGGTTTGATGGGATTGATAGACACGATCGATACTCAAATCGCAATGTGGTTTTCTTCGATgtatgatttccatggaatttgtctttgcgttgttctatttatgttacagctcccttctcattggtgtctctatgattataaacag----------
   ||  ||| |||| || ||||||||||| ||||| ||||| |||||||| ||||||  ||||||| |||| ||||| | |||||| || || || ||||||||  |  |||| ||||  |  |  | || |   |   |  ||  || |    |         || |||   |||||  ||            
AGTGTTGGGAGAGAAGATTTGTTATGTTCAATTTCCGCAGAGATTTGATGGCATTGATCAACACGATAGATATTCAAACCACAATGTTGTGTTTTTTGATgtatgtatggcatg-aattcattctaactttatctgaaagacattgaagatagtattctgaacaagtttctgc-attatctacttctctttgcag

upper sequence: AT2G21770.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 10
GCAGTCCGGAAAGAAAATATGTTATGTTCAGTTTCCTCAGAGGTTTGATGGGATTGATAGACACGATCGATACTCAAATCGCAATGTGGTTTTCTTCGATgtatgatttccatggaatttgtctttgc--gttgttctatttatgttacagctcccttctc-----attggtgtctctatgattataaacag
 ||    || || ||  | || ||||| || ||||||||||| |||||||| ||||||||||| ||| |||| |||||  | |||||||| || ||||||||| | ||||  |   | || |||||||  |||   ||  || | ||   | ||  |  |        |  |  |||    |||  ||||||
TCAACTTGGGAAAAAGGTTTGCTATGTGCAATTTCCTCAGAGATTTGATGGAATTGATAGACATGATAGATATTCAAACAGAAATGTGGTATTTTTCGATgtaagttttctcttccaattttctttgcttgtttgactgcttttcttttggttctttagtatggcagcttctaactccccaattgaaaacag

upper sequence: AT2G21770.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA08G15380.1 (Glycine max), 5'ss of exon 10
GCAGTCCGGAAAGAAAATATGTTATGTTCAGTTTCCTCAGAGGTTTGATGGGATTGATAGACACGATCGATACTCAAATCGCAATGTGGTTTTCTTCGATgtatgatttc-catggaatttgtctttgcgttgttctatttatgttacagctcccttctc-----attggtgtctctatgattataaacag
 ||    || || ||  | || ||||| || ||||||||| | |||||||| ||||||||||| ||| |||| |||||  | ||||| || || ||||||||| | |||| | |    ||| | |    |||   ||  || | || |||  |  |  |      | |  |  |||    |||  ||||||
TCAACTAGGGAAAAAGGTTTGCTATGTGCAATTTCCTCAGCGATTTGATGGAATTGATAGACATGATAGATATTCAAACAGAAATGTTGTATTTTTCGATgtaagttttctcttcctctttttttgcttgtttgactgcttttctttcagtcctttaatatggcaactactaactccccaattgaaaacag

upper sequence: AT2G21770.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 10
GCAGTCCGGAAAGAAAATATGTTATGTTCAGTTTCCTCAGAGGTTTGATGGGATTGATAGACACGATCGATACTCAAATCGCAATGTGGTTTTCTTCGATgtatgatttccatggaatttgtctttgcgttgttctatt-tatgttacagctcccttctcattggtgtctctatgattataaacag
    |  || |||| | | || ||||| |||||||| || || ||||||||||| ||| | || ||| ||||||||||||| ||| | || ||||| ||||||||  | || |    |||   |||   |   | |||| | | ||| |    | ||   |  | ||  | |   |||  ||||||
CTCATTGGGTAAGAGAGTTTGCTATGTCCAGTTTCCCCAAAGATTTGATGGGATCGATCGTCATGATAGATACTCAAATCGAAATATCGTCTTCTTTGATgtatgtatacctttttcttttcttttttttccctttattgtttcttata---tcattgggaaagctgatttttcaattg-aaacag