Sequence
atgc intronic sequence ATGC exonic sequenceGACGTGGTGCTAAGGAGGCAAATCTTTACTCTGAGATAGCTGAAGGCATTTCTTCTTATGGTGTCACCCGTCATCGCCATGgtatgtcacaaactaattatcacaatgagttaaaattttgccatgatttgaattcaatatctcttttgttttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G19940.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G19940.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os10g35170.1 (Oryza sativa), 5'ss of exon 10
GACGTGGTGCTAAGGAGGCAAATCTTTACTCTGAGATAGCTGAAGGCATTTCTTCTTATGGTGTCACCCGTCATCGCCATGgtatgtcacaaactaat-tatcacaatgagttaaaatt--ttgccatgatttgaattcaatatctcttttgttttgcag---------------------
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GACGTGGAGCGAAGGAGGCGAATCTTTACACTGAGATAGCTGAAGGCATCCATGCTTATGGAATAAAAGGCCACCGTCATGgtaacccttgttttgccattttccaaaaagctggaatcaacatcagtgttgtagttactgtgttatagctctttaacgaaattgtttattctcccttgga
upper sequence: AT2G19940.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os03g42110.1 (Oryza sativa), 5'ss of exon 10
GACGTGGTGCTAAGGAGGCAAATCTTTACTCTGAGATAGCTGAAGGCATTTCTTCTTATGGTGTCACCCGTCATCGCCATGgta---------tgtcacaaactaatt---atcacaatgagttaa--aattttgccatgat-ttgaattcaatatctcttttgttttgcag---------------------------------------------------------------------------------------------------
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GACGTGGAGCTAAGGAAGCCAATCTCTACACCGAGATAGCTGAAGGCATTCATGCTTATGGAATAAAAGGCCACCGGCATGgtaattttgtttttttctagattagctgaaatcaacattaattatgtgaccttatactgctctttaacagaattttattctcctgtgataaatgaatatactaataatagagtgtttgcttatatttatcttgttagttacctttaaggtagcctttctttattaacacaatgtgataaaaccatgccag
upper sequence: AT2G19940.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv03s0063g01110.t01 (Vitis vinifera), 5'ss of exon 9
GACGTGGTGCTAAGGAGGCAAATCTTTACTCTGAGATAGCTGAAGGCATTTCTTCTTATGGTGTCACCCGTCATCGCCATGgtatg---tcacaaactaat----tatcacaatgagttaaaattttgccatgatttgaatt---caatatctcttttgttttgcag--------------
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GTCGTGGTGCCAAGGAGGCAAATCTGTACACTGAAATAGCTGAAGGCATTCATTCTTATGGTATTACAAGGCATCGCCATGgtaagattttgtaaatcagaatgatattacaatgaagcaaaatccctatctatttacaattattttctttccatttaaattcataatattttttcatgatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125102564|gb|EL157278.1|EL157278EST: CTTATGGTGTCACCCGTCATCGCCAT
genomic: CTTATGGTGTCACCCGTCATCGCCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACGTGGTGCTAAGGAGGCAAATCTTTACTCTGAGATAGCTGAAGGCATTTCTTCTTATGGTGTCACCCGTCATCGCCATGgtatgtcacaaactaattatcacaatgagttaaaattttgccatgatttgaattcaatatctcttttgttttgcag
- - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - CTGAAG