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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGCTAGTTGCATGTTGGCCTCAGGAAGTGATGACGGGACATTCTCCATCCGTGATCTTAGACTGATCAAAgtaagttaaaaaccgtagctatatattttccttagcaatctcttaacaagattctgatatggtggcatataaatcttgaactag

Basic information

species Arabidopsis thaliana
transcript AT2G19540.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19540.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA08G11020.1 (Glycine max), 5'ss of exon 10
GCTGGCTAGTTGCATGTTGGCCTCAGGAAGTGATGACGGGACATTCTCCATCCGTGATCTTAGACTGATCAAAgta-agttaa------------------aaaccgtagctatatattttccttagcaatctcttaacaagattctgatatggtggcatataaatcttgaactag
| |||||||||| ||||||||||| || |||||||| |||||  | || || |||||||| |||||| |||| ||| || ||                   ||| ||  | || | ||||     || ||  |        |  | |||| |  |  ||| | |||  ||      
GTTGGCTAGTTGTATGTTGGCCTCGGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAGgtataggtagcctgacttcataaagaataaaacgatggtaaacatttattacaggaaggttactgtttgcatgtgatgttctctcatgtcaatggtgttt---

upper sequence: AT2G19540.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA05G28040.2 (Glycine max), 5'ss of exon 10
GCTGGCTAGTTGCATGTTGGCCTCAGGAAGTGATGACGGGACATTCTCCATCCGTGATCTTAGACTGATCAAAgta--agttaa------aaaccgtagctatatattttccttagcaatctcttaacaagattctgatatggtggcatataa----atcttgaactag-----
| |||||||||| ||||||||||| || |||||||| |||||  | || || |||||||| |||||| |||| |||  |||| |      |||   ||     ||| |   | |       |  ||||| ||   | |    ||| ||| | |     |||      |      
GTTGGCTAGTTGTATGTTGGCCTCTGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAGgtacaagttgacttcgtaaagaataaaacgatagtaaacatgcttcatttataacaggaaggttactgtgtg-catgtgatgttctctcatgtcaatggtg

upper sequence: AT2G19540.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv11s0016g02270.t01 (Vitis vinifera), 5'ss of exon 9
GCTGGCTAGTTGCATGTTGGCCTCAGGAAGTGATGACGGGACATTCTCCATCCGTGATCTTAGACTGATCAAAgtaag---ttaaaaaccgtagctatatattttccttagcaatct--cttaacaa-gattctga--tatggtggcatata-aatcttgaactag-------
||||||||| || ||| ||||||| ||||||||||| |||||||| || || |||||||||||  || |||| ||| |   ||    |   ||  |  |  |     |||  | |||   ||  ||| |  | |||  |||   || | ||  || |    | | |       
GCTGGCTAGCTGTATGCTGGCCTCTGGAAGTGATGATGGGACATTTTCTATTCGTGATCTTAGGTTGCTCAAGgtatgcattttctgagaatattttaaagtgaatattaatattctgcttttgcaatggatttgacctatcccggtaaatctaagcaaagaatggccttttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124922063|gb|EL000390.1|EL000390
EST:     CAGGAAGTGATGACGGGACATTCTCCATCCGTGATCTTAGACTGATCAAA                         GGTGGAGATGCTGTGGTAGCACATTT
genomic: CAGGAAGTGATGACGGGACATTCTCCATCCGTGATCTTAGACTGATCAAAgtaagttaaa ... cttgaactagGGTGGAGATGCTGTGGTAGCACATTT
EST: gi|164216789|gb|ES111301.1|ES111301
EST:     CAGGAAGTGATGACGGGACATTCTCCATCCGTGATCTTAGACTGATCAAA                         GGTGGAGATGTCTGTGGTAGCACATTTTGAGTACCATAAGC
genomic: CAGGAAGTGATGACGGGACATTCTCCATCCGTGATCTTAGACTGATCAAAgtaagttaaa ... cttgaactagGGTGGAGATG-CTGTGGTAGCACATTTTGAGTACCATAAGC