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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAGGCGATCTTCTATATGCTATTGAAAGAGTGTTGAAGCTTTCAGTTCCAAATTTATATGTGTGGCTCTGCATGTTCTACTGCTTCTTCCACCTTTGgtatgctgtgatcccatctctttcaaaataatttgcaaattcgaaaaaccgaaaaaggctaaatctcatacgaatttgatatttttagtttcttagagtcggtgatgtaatttcagttactgaacgcaaatctcttgtccaaag

Basic information

species Arabidopsis thaliana
transcript AT2G19450.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19450.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os06g36800.1 (Oryza sativa), 5'ss of exon 9
TGAAAGGCGATCTTCTATATGCTATTGAAAGAGTGTTGAAGCTTTCAGTTCCAAATTTATATGTGTGGCTCTGCATGTTCTACTGCTTCTTCCACCTTTGgtatg---ctgtgatcccatctctttcaaaataatttgcaaa-ttcgaaaaaccgaaaaaggctaaatctcatacgaatttgatatttttagtttcttagagtcggtgatgtaatttcagttactgaacgcaaatctcttgtccaaag
|||||||  || |  |  ||||||| || ||||| |||||  | ||||| ||||  |||||||| ||||| |||||||||||||| || ||||| || ||||| |   || ||||  | |   |||     |   || ||   || | |    | |    ||    || |   |   |   |  |      ||| |  |                                                 
TGAAAGGGAATTTCTTGAATGCTATAGAGAGAGTATTGAAATTATCAGTGCCAACATTATATGTCTGGCTTTGCATGTTCTACTGTTTTTTCCATCTCTGgtaagtatctttgataactttgttttgtccctgtattacattctttgtatcttccagttgggtaccatattgcatatacaagg-accaactgttccacaac-----------------------------------------------

upper sequence: AT2G19450.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G169089_T01 (Zea mays), 5'ss of exon 9
TGAAAGGCGATCTTCTATATGCTATTGAAAGAGTGTTGAAGCTTTCAGTTCCAAATTTATATGTGTGGCTCTGCATGTTCTACTGCTTCTTCCACCTTTGgtatgctgtgatcccatctctttcaaaataatttgcaaattcgaaaaaccgaaaaaggctaa-atctcatacgaatttgatatttttagtttcttagagtcggtgatgt--aatttcagt--tactgaacgcaaatctcttgtccaaag----
|||||||  || || |  ||||||| |||||||| || || || ||||| ||||  |||||||| ||||| ||||||||||| ||||| || ||  | |||| |  | |  | |  ||  ||  | | ||  ||  ||||| |     | |  |  || | | ||  ||    |||| | |   |||    |    | | |  |||| |  | ||||  |   | |         ||| |||           
TGAAAGGGAATTTTTTGAATGCTATAGAAAGAGTCTTAAAACTCTCAGTGCCAACATTATATGTATGGCTTTGCATGTTCTATTGCTTTTTTCATTTATGgt-tagtatcttgct-tcagttcaacagtacctt--aaatttgtgcggcagtgattggtttatataacaggttaattgggt---tttgacctgcatgggactttgatttccattttccatggcattcttgtttgctcttttggttggtttcag

upper sequence: AT2G19450.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA13G16560.1 (Glycine max), 5'ss of exon 9
TGAAAGGCGATCTTCTATATGCTATTGAAAGAGTGTTGAAGCTTTCAGTTCCAAATTTATATGTGTGGCTCTGCATGTTCTACTGCTTCTTCCACCTTTGgtatgctgtgatcccatctctttcaaaata-atttgcaaattcgaaaaaccgaaaaaggctaaatctcatacgaatttgatatttttagtttct-tagagtcggtgatgtaatttcagttactgaacgcaaatctcttgtccaaag
| || ||  | ||||| || || || || |||||  |||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |  |  ||   | |  ||||| ||   | |     |  | |    |   | | | ||    |  || ||| ||   || || |  | |  || | |   | |                                       
TCAAGGGAAACCTTCTTTACGCCATCGAGAGAGTTCTGAAGCTTTCTGTTCCAAATTTATATGTGTGGCTCTGCATGTTCTATTGCTTTTTCCACCTTTGgtattccatc-tcttgtttggttcaacatgtgtgtatgtgtgtgcattttccttacaagata---ttagtatgaagtt---atcttcacctgccataaattgaataa---------------------------------------

upper sequence: AT2G19450.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA17G06120.1 (Glycine max), 5'ss of exon 9
TGAAAGGCGATCTTCTATATGCTATTGAAAGAGTGTTGAAGCTTTCAGTTCCAAATTTATATGTGTGGCTCTGCATGTTCTACTGCTTCTTCCACCTTTGgtatgctgtgatcccatctctttcaaaataatttgcaaattcgaaaaaccgaaaaaggctaaatctca--tacgaatttgatatttttagtttcttagagtcggtgatgtaatttcagttactgaacgcaaatctcttgtccaaag
| || ||  | ||||| || || |  || |||||  |||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |  |  ||   | |  ||||| ||    ||    | |      |  | ||    | | ||| |  || ||| || ||   || |  | |    | | |   |                                       
TCAAGGGAAACCTTCTTTACGCCACCGAGAGAGTTCTGAAGCTTTCTGTTCCAAATTTATATGTGTGGCTCTGCATGTTCTATTGCTTTTTCCACCTTTGgtattccatc-tcttgtttggttcaacatg---tgtgtgtgcatttttcttataagatattagtctgaactatgaagttaat---ttcacctgccataaattgaata---------------------------------------

upper sequence: AT2G19450.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 9
TGAAAGGCGATCTTCTATATGCTATTGAAAGAGTGTTGAAGCTTTCAGTTCCAAATTTATATGTGTGGCTCTGCATGTTCTACTGCTTCTTCCACCTTTGgtatgct--gtgatcccatctctt--tcaaaataatttgcaaattcgaaaaaccgaaaaaggctaaatctcatacgaatttgatatttttagtttcttagagtcggtgatgtaatttcagttactgaacgcaaatctcttgtccaaag
|||| ||  || || | |||||  | || ||  | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  |     |  |||||  | ||  | ||  |  ||| |   ||                 | | |  |   || ||| || | |||||  ||| ||                                                  
TGAAGGGGAATTTTTTTTATGCATTGGAGAGGATTTTGAAGCTTTCTGTTCCAAATTTATATGTGTGGCTCTGCATGTTCTACTGCTTTTTCCACCTCTGgtgagtccaatcttcccaatttttagtgaaggttttttcccttttttttttttttcctctttccagaaattg-acaaatatgttttttttttttttttttt-----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124836035|gb|EH920474.1|EH920474
EST:     CCAAATTTATATGTGTGGCTCTGCATGTTCTACTGCTTCTTCCACCTTTG                         GTTAAACATATTGG
genomic: CCAAATTTATATGTGTGGCTCTGCATGTTCTACTGCTTCTTCCACCTTTGgtatgctgtg ... ttgtccaaagGTTAAACATATTGG