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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACGTAGACAACCACAATACTTCACAAGTGCATTTATCGGATACGCTGTTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagtttttgtgtcttaattgttgtcatctatttattgcaaccttattttgggatttctctctgataggtttttgtttttgttttgcctttgtttcag

Basic information

species Arabidopsis thaliana
transcript AT2G03120.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA06G08620.3 (Glycine max), 5'ss of exon 10
AAGACGTAGACAACCACAATACTTCACAAGTGCATTTATCGGATACGCTGTTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagtt---tttgtgtcttaattgttgtcatctatttattgcaaccttattttgggatttctctctgataggtttttgtttttgttttgcctttgtttcag
 ||| | | ||| || || || ||||  ||||||||| | |||||| |||||||  || |||| || ||||| || |||||||||||||| || |||||||| | |    | || |  |       | ||||  |||| | |  | |    ||    |||  | |   | |    ||| |  |||| || | ||||   |||
CAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgtggtgtggggttgtgaaactatcatggatttttggtgatcaaccttctctattatttttc-aca---ctttctaattgtatttcttttgc--cag

upper sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA06G08620.2 (Glycine max), 5'ss of exon 10
AAGACGTAGACAACCACAATACTTCACAAGTGCATTTATCGGATACGCTGTTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagtttt---tgtgtcttaattgttgtcatctatttattgcaaccttattttgggatttctctctgataggtttttgtttttgttttgcctttgtttcag
 ||| | | ||| || || || ||||  ||||||||| | |||||| |||||||  || |||| || ||||| || |||||||||||||| || |||||||| | | |    || |  |       | ||||  |||| | |  | |    ||    |||  | |        ||| |  || | |||    |      | |
CAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgtggtgtggggttgtgaaactatcatggatttttggtgatcaaccttctctattatttttcac--actttctaattgtatttcttttgccagccgg

upper sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 10
AAGACGTAGACAACCACAATACTTCACAAGTGCATTTATCGGATACGCTGTTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagtt-tttgtgtcttaattgttgtcatctatttattgcaaccttattttg-ggatttctctctgataggtttttgtttttgttttgcctt----tgtttcag--------------------------
 ||| | | ||| || || || ||||  ||||||||| | |||||| |||||||  || |||| || ||||| || |||||||||||||| || |||||||| | |  | ||| || |  || || |    | ||          |    ||| |||  | ||  ||||   |||| ||  |   | | |  |    | |||||                           
TAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgatctgtttcatcttttttttttcttgttagggatggtgtggggttgtggaactatcattgat---ttttggtgatcaatctactctattatttttcacacttctaattgtatttcttttgccag

upper sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 10
AAGACGTAGACAACCACAATACTTCACAAGTGCATTTATCGGATACGCTGTTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagtttttgtgtcttaattgttgtcatctatttattgcaaccttattttgggat--ttctctctgataggttttt----gtttttgttttgcctt---tgtttcag----------------------------------------------------------------------------------------
 ||| | | |      || ||||| |  ||||||||| | |||||  |    ||| || |  | || ||||| |||||||||||||||||||| |||||||| | |  |      |  |||  | |   |||| |     |  | | |   |  ||  ||| || || |   |||      || | |   | || ||   ||||| ||                                                                                        
CAGAGGGAAAGGGAACCAGTACTTTAAGAGTGCATTTTTGGGATATACAACCGGTTTGGTTGTAACAATTGTTGTCATGAACTGGTTTCAAGCTGCACAGgtgactactacaaaatccatttctctatcctatatgactgatacgtgtggagatatagttccctttgttgaatttcattcagtatctagctggctttaactgtttaagaccagtggaagttagagtatttccatgtgtgagttttctcgtgttattcactacttggtcctaactgttattctaacttcactttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124960813|gb|EL035452.1|EL035452
EST:     ATTGTAGTCATGAACTGGTTTCAAGCAGCACAG                         CCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCAC
genomic: ATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagttttt ... tttgtttcagCCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCAC
EST: gi|164144250|gb|ES093593.1|ES093593
EST:     CGATTGTAGTCATGAACTGGTTTCAAGCAGCACAG                         CCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCAC
genomic: CGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagttttt ... tttgtttcagCCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCAC
EST: gi|124739255|gb|EH830417.1|EH830417
EST:     TTGTAGTCATGAACTGGTTTCAAGCAGCACAG                         CCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCAC
genomic: TTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagttttt ... tttgtttcagCCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCAC
EST: gi|164035761|gb|ES096042.1|ES096042
EST:     TTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAG                         CCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGG
genomic: TTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagttttt ... tttgtttcagCCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGG
EST: gi|125305726|gb|EL319811.1|EL319811
EST:     TTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAG                         CCTGCTTTGTTATACNTTGTCCCAGCCGTAA
genomic: TTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagttttt ... tttgtttcagCCTGCTTTGTTATACATTGTCCCAGCCGTAA