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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTGATGGCCCTGGATCTGTTTTAGTGAATTTGCTAACTAGTTTAAGGCATTTGCCACCGGCTATGCACTCAGTTCTTATCGTCATGGCTCTTACATGGgtgagtgccaaagaaaaattatgatcagttattacatatttcacactgtttcttttcttaaactctttaatgatctttaaaattatttgcttctgttatatttttgattgtggtcttgttctttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G02860.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02860.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv01s0026g01960.t01 (Vitis vinifera), 5'ss of exon 9
CGTTGATGGCCCTGGATCTGTTTTAGTGAATTTGCTAACTAGTTTAAGGCATTTGCCACCGGCTATGCACTCAGTTCTTATCGTCATGGCTCTTACATGGgtgagtgccaaagaaaaattatg--atcagtt--attac--atatttca---cactgtttcttttc---ttaaactctttaatgatctttaaaattatttgcttctgttatatttttg----attgtggtcttgttctttgcag-----------------
|  |||||| |||||| | || || || ||| || | || ||  |||||||||||||||| || ||||| ||||| ||| | |||||||||||||  ||||| ||||||  || |     |||  | || ||   || |  ||| | ||   || | |    |||    |||   | |||| ||||  || |   |   || ||||||   ||  |||     ||| |||||| | |||   |                  
CAGTGATGGACCTGGAGCAGTATTGGTCAATCTGTTGACAAGCCTAAGGCATTTGCCACCTGCAATGCATTCAGTGCTTCTTGTCATGGCTCTTAGTTGGgtaagtgcctcagtagttacatgtcaccaattttgtttccaatactgcatggcaatatcaaatttgaaattagcttgtttattgattattgatcattagtgtttctgtgtaatggttgctctgttgaggtcttttccttgatattatactcctgtatgcag