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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTACGTTGGCATTCACGAGCCCAAGACTTTAGATGAGGCTGATTTAGCTCGCAAAAGGCTAATATTTGACGAATTCTTTTACCTACAGgtaactagcttcttcaataattgtcttctcataaacagaactctaagtattaatttgttagtgaagaagcgattaatccgttgtctttggttttcatacag

Basic information

species Arabidopsis thaliana
transcript AT2G01440.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01440.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G315176_T02 (Zea mays), 5'ss of exon 1
----------GCCTACGTTGGCATTCACGAGCCCAAGACTTTAGATGAGGCTGATTTAGCTCGCAAAAGGCTAATATTTGACGAATTCTTTTACCTACAGgtaac-tagcttcttcaataattgtcttctcataaacagaactctaagtattaatttgttagtgaagaagcgattaatccgttgtctttggttt-tcatacag-
          || ||| | || |||||| | || |||  |  |  ||| |||||||| ||||| | |||||| |||||||| || ||||||||||| |||||| | | |||  ||  |      | | ||  |  |||    |  |||   | ||| ||  ||| ||||   ||| |   ||  | | ||| || | |  | | 
TTAATTTTAGGCTTACATGGGAATTCACAAACCTAAGGATCGATCTGAAGCTGATTTTGCTCGAAGAAGGCTTATATTTGATGATTTCTTTTACCTCCAGgtatcattgctgttttca-gcccatttgcttgttgacatctgtgcaagagctcatt-gtatgtgtagaaa--attcagttgtattatgtggcttattagtctgc

upper sequence: AT2G01440.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv01s0011g04880.t01 (Vitis vinifera), 5'ss of exon 9
GCCTACGTTGGCATTCACGAGCCCAAGACTTTAGATGAGGCTGATTTAGCTCGCAAAAGGCTAATATTTGACGAATTCTTTTACCTACAGgtaacta----gcttcttcaataattgtcttctcata--aacagaactctaagtatta----atttgttagtga--agaagcgattaatccgttgtctttggttttcatacag
|| || || || |||||| |||| |||  |||| | |||||||||||||||||||||||| | |||||||| || |||||||| || ||||| | ||    |||| |    | ||  |  |  |||   |  | | || || ||  |     | ||||| |||    | | |  || |  | || || ||             
GCTTATGTGGGGATTCACCAGCCAAAGGATTTAAAAGAGGCTGATTTAGCTCGCAAAAGGTTGATATTTGATGAGTTCTTTTATCTTCAGgtgattaaactgcttgtcatcttatcatagttccattttactatagctttaggtgatgtatgaattgttggtggctggcaacatttcaaaccttttcctt-------------