1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGCTGCGGGGAAAGCAGCAGCAGCAGGACACACTTCCCAAGTATGCCACACCGGCTCTCTTGTCAGCTGACGTTAAAAGCAAGGCAGAGGCATTGGACAAgtaagcaaggctccttgtgtctttgtcttttaaaagaaatgctaaatctgataatagagagtgaaccagctatggatgttttacag
species | Arabidopsis thaliana |
transcript | AT1G79930.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGCATCGGACAA GTTTTGCAGGCCTATAATTGACCAAACCAAAGCCGGTGGCTAAAGCAGAGGEST: gi|124732428|gb|EH823830.1|EH823830
genomic: GGCATTGGACAAgtaagcaagg ... tgttttacagGTTTTGCAGGCCTATAA-TGACCAAACCAAAGCCGGTGGCTAAAGCAGAGG
EST: CAGAGGCATTGGACAA GTTTTGCAGGCCTATAATGACCAAACCAAAGCCGGTGGCTAAAGCAGAGGC
genomic: CAGAGGCATTGGACAAgtaagcaagg ... tgttttacagGTTTTGCAGGCCTATAATGACCAAACCAAAGCCGGTGGCTAAAGCAGAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGCGGGGAAAGCAGCAGCAGCAGGACACACTTCCCAAGTATGCCACACCGGCTCTCTTGTCAGCTGACGTTAAAAGCAAGGCAGAGGCATTGGACAAgtaagcaaggctccttgtgtctttgtcttttaaaagaaatgctaaatctgataatagagagtgaaccagctatggatgttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG