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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGAAAACCAGGCAGAGTTTCTTCAGTTAGTAAATGAGCCCTATGAGGGTTCTGACGGgtgagtcctccaatctgtttattgtaatctaaggttctgtcagatgtaattatatgcttcttattgatatttcattaaactaaataatttgattcacaaagtttaaaaacataactcatcag

Basic information

species Arabidopsis thaliana
transcript AT1G79650.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79650.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os02g08300.2 (Oryza sativa), 5'ss of exon 10
--GAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGAAAACCAGGCAGAGTTTCTTCAGTTAGTAAATGAGCCCTATGAGGGTTCTGACGGgtgagtcct-ccaatctgtttattgtaatctaaggttctgtcagatgtaattatatgcttcttattgatatttcattaaactaaataatttgattcacaaagtttaaaaacataactcatcag
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AGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTCAGGAGAACCATGATGAGTTCCTTCAGTTAATAAATGAGCCCTTTGATGGTGCTGATGGgtatgaactgttcatctgcttgattcaattct-ggtttcatttgatttg-ttatagggttat-----aggattcgttaatgcgaaatgaaaaaaaaatcaattataa----------------