Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGAAAACCAGGCAGAGTTTCTTCAGTTAGTAAATGAGCCCTATGAGGGTTCTGACGGgtgagtcctccaatctgtttattgtaatctaaggttctgtcagatgtaattatatgcttcttattgatatttcattaaactaaataatttgattcacaaagtttaaaaacataactcatcag

Basic information

species Arabidopsis thaliana
transcript AT1G79650.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79650.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os02g08300.2 (Oryza sativa), 5'ss of exon 10
--GAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGAAAACCAGGCAGAGTTTCTTCAGTTAGTAAATGAGCCCTATGAGGGTTCTGACGGgtgagtcct-ccaatctgtttattgtaatctaaggttctgtcagatgtaattatatgcttcttattgatatttcattaaactaaataatttgattcacaaagtttaaaaacataactcatcag
  |||||  | ||| | || ||||||||||||||| | ||||| || ||||| |  ||||| ||||||||| |||||||||||| ||| ||| |||| ||||  |  ||    ||||| ||  |  |||    ||||   |  ||| |  ||||| | || |     |   ||| ||||    ||       |   |  || | |||                
AGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTCAGGAGAACCATGATGAGTTCCTTCAGTTAATAAATGAGCCCTTTGATGGTGCTGATGGgtatgaactgttcatctgcttgattcaattct-ggtttcatttgatttg-ttatagggttat-----aggattcgttaatgcgaaatgaaaaaaaaatcaattataa----------------