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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAGgtaagactcgtctagttttcgttatcctggtccagtagtttgtaagacttctcactgattccgaacctcttatgttggaacaactgcttttgttaccag

Basic information

species Arabidopsis thaliana
transcript AT1G79650.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116469868|gb|EG512460.1|EG512460
EST:     TTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAG                         CCCATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATT
genomic: TTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAGgtaagactcg ... ttgttaccagCCCATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATT
EST: gi|163987194|gb|ES134926.1|ES134926
EST:     TTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAG                         CCCATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTC
genomic: TTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAGgtaagactcg ... ttgttaccagCCCATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTC
EST: gi|116469869|gb|EG512461.1|EG512461
EST:     TTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAG                         CCCATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATT
genomic: TTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAGgtaagactcg ... ttgttaccagCCCATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATT