1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AATTGCCCTCACAACAGCTGAATATCTGGCTTATGAATGTGGGAAACACGTCCTTGTTATATTGACGGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaaaatgaatatttgataccggagtagttcctttatttcataccatgttttttcctcttcatgtttgataataagattgagaaactgtag
species | Arabidopsis thaliana |
transcript | AT1G76030.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCCTTGTTATATTGACGGATATGAGTTCTTATGCTGATGCTCTTCGTGAG GTTTCCGCTGCCCGAGAAGAGGTTCCCGGAAGACGTGGATATCCAGGTTATEST: gi|124918592|gb|EH992416.1|EH992416
genomic: TCCTTGTTATATTGACGGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaaaatgaa ... gaaactgtagGTTTCCGCTGCCCGAGAAGAGGTTCCCGGAAGACGTGGATATCCAGGTTAT
EST: CCTTGTTATATTGACGGATATGAGTTCTTATGCTGATGCTCTTCGTGAG GTTTCCGCTGCCCGAGAAGAGGTTCCCGGAAGACGTGGATATCCAGGTTATEST: gi|125161475|gb|EL188581.1|EL188581
genomic: CCTTGTTATATTGACGGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaaaatgaa ... gaaactgtagGTTTCCGCTGCCCGAGAAGAGGTTCCCGGAAGACGTGGATATCCAGGTTAT
EST: TTCTTATGCTGATGCTCTTCGTGAG GTTTCCGCTGCCCGAGAAGAGGTTCCCGGAAGACGTGGATATCCAGGTTATEST: gi|86066844|gb|DR362601.1|DR362601
genomic: TTCTTATGCTGATGCTCTTCGTGAGgtaaaatgaa ... gaaactgtagGTTTCCGCTGCCCGAGAAGAGGTTCCCGGAAGACGTGGATATCCAGGTTAT
EST: TCCTTGTTATATTGACGGATATGAGTTCTTATGCTGATGCTCTTCGTGAG GTTTCCGCTGCCCGAGAAGAGGTTCC
genomic: TCCTTGTTATATTGACGGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaaaatgaa ... gaaactgtagGTTTCCGCTGCCCGAGAAGAGGTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGCCCTCACAACAGCTGAATATCTGGCTTATGAATGTGGGAAACACGTCCTTGTTATATTGACGGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaaaatgaatatttgataccggagtagttcctttatttcataccatgttttttcctcttcatgtttgataataagattgagaaactgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT