1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAAAATGATGCAAGCCGTTGATGAAGAGCGATATGATGAAGCCGgtaagctttgctctagtctctatatccacaatgtacactttattagtggttacataacttactgctatgattggtggcccagcatttgagaccaatctgatttatgtatgtaacagaaacttttatagcttttcgtaaatcttggtctaatctctaatgatcaatacactgttggttatatgatttgcag
species | Arabidopsis thaliana |
transcript | AT1G75380.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTTGAGCAAAATGATGCAAGCCGTTGATGAAGAGCGATATGATGAAGCCG CTGAGTAGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAAEST: gi|125243510|gb|EL257595.1|EL257595
genomic: TTTGAGCAAAATGATGCAAGCCGTTGATGAAGAGCGATATGATGAAGCCGgtaagctttg ... tgatttgcagCTGAGT-GGAGAGACAAGCTTGGTCAGTTTCGGGCCAAA
EST: TGATGAAGAGCGATATGATGAAGCCG CTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGAEST: gi|125261918|gb|EL276003.1|EL276003
genomic: TGATGAAGAGCGATATGATGAAGCCGgtaagctttg ... tgatttgcagCTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGA
EST: TTTGAGCAAAATGATGCAAGCCGTTGATGAAGAGCGATATGATGAAGCCG CTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGEST: gi|124773205|gb|EH863334.1|EH863334
genomic: TTTGAGCAAAATGATGCAAGCCGTTGATGAAGAGCGATATGATGAAGCCGgtaagctttg ... tgatttgcagCTGAGTGGAGAGACAAGCTTGGTCAGTTTCGG
EST: TATGATGAAGCCG CTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGA
genomic: TATGATGAAGCCGgtaagctttg ... tgatttgcagCTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAAAATGATGCAAGCCGTTGATGAAGAGCGATATGATGAAGCCGgtaagctttgctctagtctctatatccacaatgtacactttattagtggttacataacttactgctatgattggtggcccagcatttgagaccaatctgatttatgtatgtaacagaaacttttatagcttttcgtaaatcttggtctaatctctaatgatcaatacactgttggttatatgatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC