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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATGTTCTTTCAAACGGAAACGCAGTGCAAGAAGTTGCTCACATCTCAAACGGATCACATCCTGGAAACTGCATATCGGTTCTACGTgtaagcctcttttacaacagagtgatacaaaagtttccgcttaattctcttttgactcatttgtttttgtgtattag

Basic information

species Arabidopsis thaliana
transcript AT1G73360.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73360.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA16G34350.1 (Glycine max), 5'ss of exon 9
TGGGATGTTCTTTCAAACGGAAACGCAGTGCAAGAAGTTGCTCACATCTCAAACGGATCACATCCTGGAAACTGCATATCGGTTCTACGTgtaagcc-tcttttacaacagagtgatacaaaagtttccgcttaat------------tctcttttgactcatttgtttttgtgtattag----------
|||||||||||||| || || || || |||||||| |||||||| ||  |||| || ||||| ||||| ||||||||||| || || || || || | |  |||    ||  ||  ||   || |||  | || |             |  ||    ||  |    ||||| | | ||||          
TGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGAgtgagtcatgctttctctcaatgttctaatcaaattttggttttacatatgttgtcaattcctaaaaacataacatttttttttttttagtcccaattaa