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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGTACCTCACTCGGCTAGGAGGGAAAGTATCTGTCAAGCTGATAAACCGAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaagcattgttttgcagagtcactgtttctcttttctaatcattgctatggaaattttcggcattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G73020.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116436471|gb|EG479063.1|EG479063
EST:     AATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: AATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423940|gb|EG466532.1|EG466532
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423946|gb|EG466538.1|EG466538
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116435865|gb|EG478457.1|EG478457
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436463|gb|EG479055.1|EG479055
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTAATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116435910|gb|EG478502.1|EG478502
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436478|gb|EG479070.1|EG479070
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436399|gb|EG478991.1|EG478991
EST:     GAGAAATCGACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436349|gb|EG478941.1|EG478941
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436465|gb|EG479057.1|EG479057
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTAATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423949|gb|EG466541.1|EG466541
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423860|gb|EG466452.1|EG466452
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423780|gb|EG466372.1|EG466372
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436460|gb|EG479052.1|EG479052
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436362|gb|EG478954.1|EG478954
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436484|gb|EG479076.1|EG479076
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436480|gb|EG479072.1|EG479072
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436488|gb|EG479080.1|EG479080
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436474|gb|EG479066.1|EG479066
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116435879|gb|EG478471.1|EG478471
EST:     GTGGAGTACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436397|gb|EG478989.1|EG478989
EST:     GAGAAATCGACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436404|gb|EG478996.1|EG478996
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423711|gb|EG466303.1|EG466303
EST:     GTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436467|gb|EG479059.1|EG479059
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423947|gb|EG466539.1|EG466539
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436479|gb|EG479071.1|EG479071
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436359|gb|EG478951.1|EG478951
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTATATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423849|gb|EG466441.1|EG466441
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436468|gb|EG479060.1|EG479060
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436486|gb|EG479078.1|EG479078
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116457871|gb|EG500463.1|EG500463
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436469|gb|EG479061.1|EG479061
EST:     TGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: TGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423941|gb|EG466533.1|EG466533
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT