1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGGGGTTTTGTATGATTTACTACAGAAGGAAGTAGTCGCCTTGAGAAAATCTTCGCATGAAAAGGATCAAAGCCTCAAAGACAAGGATGATGCCATAGAGgtaaaatctctctgaatgtaccatataaaatgttgttaaaaagacgtgtttgtaatggaagtcttgatatttttcttgtag
species | Arabidopsis thaliana |
transcript | AT1G68060.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATCAAAGCCTCAAAGACAAGGATGATGCCATAGAG ATGTTAGCAAAAAAGGTTAGAAACTTTAACAAAGGCAATAGGAAGTTGAAGEST: gi|164113228|gb|ES038294.1|ES038294
genomic: ATCAAAGCCTCAAAGACAAGGATGATGCCATAGAGgtaaaatctc ... tttcttgtagATGTTAGCAAAAAAGGTT-GAAACTTTAACAAAGGCAAT-GGAAGTTGAAG
EST: CTTCGTATG-AAAGGATCAAAGCCTCAAAGACAAGGATGATGCCATAGAG ATGTTAGCAAAAAAGGTTGAAACTTTAACAAAGGCEST: gi|125154132|gb|EL184901.1|EL184901
genomic: CTTCGCATGAAAAGGATCAAAGCCTCAAAGACAAGGATGATGCCATAGAGgtaaaatctc ... tttcttgtagATGTTAGCAAAAAAGGTTGAAACTTTAACAAAGGC
EST: CTTCGCATGAAAAGGATCAAAGCCTCAAAGACAAGGATGATGCCATAGAG ATGTTAGCAAAAAAGGTTGAAACTTTAACAAAGGCAATGGAAGTTGAAG
genomic: CTTCGCATGAAAAGGATCAAAGCCTCAAAGACAAGGATGATGCCATAGAGgtaaaatctc ... tttcttgtagATGTTAGCAAAAAAGGTTGAAACTTTAACAAAGGCAATGGAAGTTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGGTTTTGTATGATTTACTACAGAAGGAAGTAGTCGCCTTGAGAAAATCTTCGCATGAAAAGGATCAAAGCCTCAAAGACAAGGATGATGCCATAGAGgtaaaatctctctgaatgtaccatataaaatgttgttaaaaagacgtgtttgtaatggaagtcttgatatttttcttgtag
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