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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTTTCCCTTGTTGTCACACAATTTCGATCTCATCTATCAAAGGCCCTCATTCTAACAAACAGgttattctggtttatatgaatatttaaaagttcttctcatatatgtcacaccttagtaacaagattttctttttgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G67320.3
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124984484|gb|EL057138.1|EL057138
EST:     GTCACACAATTTCGATCTCATCTATCAAAGGCCCTCATTCTAACAAACAG                         AAAGTGGACAACT-CCATTCGAGAACGAGAAAA-GACAGACTAACTCC
genomic: GTCACACAATTTCGATCTCATCTATCAAAGGCCCTCATTCTAACAAACAGgttattctgg ... ttgtttgcagAAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTCC
EST: gi|164160095|gb|EL967698.1|EL967698
EST:     GTCACACAATTTCGATCTCATCTATCAAAGGCCCTCATTCTAACAAACAG                         AAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTCCAAT
genomic: GTCACACAATTTCGATCTCATCTATCAAAGGCCCTCATTCTAACAAACAGgttattctgg ... ttgtttgcagAAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTCCAAT
EST: gi|124984711|gb|EL057349.1|EL057349
EST:     TCTATCAAAGGCCCTCATTCTAACAAACAG                         AAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTACCA
genomic: TCTATCAAAGGCCCTCATTCTAACAAACAGgttattctgg ... ttgtttgcagAAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACT-CCA
EST: gi|164232934|gb|ES129184.1|ES129184
EST:     CAAAGGCCCTCATTCTAACAAACAG                         AAAGTGGACAACTACCATTCGAGAACGAGAAAAAAGACAGACTAACTCCA
genomic: CAAAGGCCCTCATTCTAACAAACAGgttattctgg ... ttgtttgcagAAAGTGGACAACTACCATTCGAGAACGAG-AAAAAGACAGACTAACTCCA
EST: gi|164063124|gb|ES149257.1|ES149257
EST:     CAAAGGCCCTCATTCTAACAAACAG                         T
genomic: CAAAGGCCCTCATTCTAACAAACAGgttattctgg ... ttgtttgcag-
EST: gi|164063124|gb|ES149257.1|ES149257
EST:     CAAAGGCCCTCATTCTAACAAACAG                         T
genomic: CAAAGGCCCTCATTCTAACAAACAGgttattctgg ... ttgtttgcag-
EST: gi|125119594|gb|EL167743.1|EL167743
EST:     TCTATCAAAGGCCCTCATTCTAACAAACAG                         AAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTCCA
genomic: TCTATCAAAGGCCCTCATTCTAACAAACAGgttattctgg ... ttgtttgcagAAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTCCA