1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTCCACATTGCTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTGTCGTCTTCAAAGGAAAATCTCTTGCgtaagtttctttgtcatcgaacttctaaacaattgaagttgatcttgtcactgtgtttggtaatttgagtgtggagaaaatccatttgaattgatcaaaa...
species | Arabidopsis thaliana |
transcript | AT1G61250.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTCTTTGCTGCAGTTGCTCCACCTGTCGTCTTCAAAGGAAAATCTCTTGC TGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGGAEST: gi|124793949|gb|EH883628.1|EH883628
genomic: GTCTTTGCTGCAGTTGCTCCACCTGTCGTCTTCAAAGGAAAATCTCTTGCgtaagtttct ... tctgtaacagTGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGGA
EST: TTGCTCCACCTGTCGTCTTCAAAGGAAAATCTCTTGC TGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGGEST: gi|125208102|gb|EL223056.1|EL223056
genomic: TTGCTCCACCTGTCGTCTTCAAAGGAAAATCTCTTGCgtaagtttct ... tctgtaacagTGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGG
EST: CCTGTCGTCTTCAAAGGAAAATCTCTTGC TGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGG-EST: gi|125031336|gb|EL103605.1|EL103605
genomic: CCTGTCGTCTTCAAAGGAAAATCTCTTGCgtaagtttct ... tctgtaacagTGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGG
EST: GTTGCTCCACCTGTCGTCTTCAAAGGAAAATCTCTTGC TGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGG
genomic: GTTGCTCCACCTGTCGTCTTCAAAGGAAAATCTCTTGCgtaagtttct ... tctgtaacagTGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCACATTGCTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTGTCGTCTTCAAAGGAAAATCTCTTGCgtaagtttctttgtcatcgaacttctaaacaattgaagttgatcttgtcactgtgtttggtaatttgagtgtggagaaaatccatttgaattgatcaaaa
- - - - - - - - - - - TGCTGC
- - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagaaa