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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGCTCCAGAGAAAATCTGGTACATTGATCAAATGCTAAAGGTTCTATCTGAGgtatattttgaacccaggttgtgagattacgtttttccgtacacttaactaacaacaaactttttacttcatatgaatttatgtaggttctaatctgagagttctaatcttgattatgtccataacag

Basic information

species Arabidopsis thaliana
transcript AT1G60070.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G60070.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA08G39930.1 (Glycine max), 5'ss of exon 9
GTTTGCTCCAGAGAAAATCTGGTACATTGATCAAATGCTAAAGGTTCTATCTGAGgtatattttgaacccaggttgtgagattacgtttttccgtacacttaactaacaacaaactttttacttcatatgaatttatgtaggttctaatctgagagttctaatcttgattatgtccataacag
|||| | |||||||| ||||||||||||||||||||||| |||||||| |||||||||||  |  ||          | ||||     | ||| |          || |||  ||         |||   | ||| | |||| | | || | || | |||   || |  ||||          
GTTTTCCCCAGAGAAGATCTGGTACATTGATCAAATGCTGAAGGTTCTGTCTGAGgtataaatataa---gaaacaagtgatttaaaatctccatg-----gtggaaaaactgacc--------catgctagttttt-tagggtattattt-agtgatctg-cctcgtgtatga---------

upper sequence: AT1G60070.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA02G03800.1 (Glycine max), 5'ss of exon 8
GTTTGCTCCAGAGAAAATCTGGTACATTGATCAAATGCTAAAGGTTCTATCTGAGgtatattttgaacccaggttgtgagattacgtttttccgtacacttaactaacaacaaactttttacttcatatgaatttatgtaggt-tctaatctgagagttctaatcttgattatgtccataacag
|| | | |||||||| |||||||| |||||||| ||||| |||||||| ||||||||||| | | ||   | |     || ||  ||  |    || | |   | |     |||  |   |   |||   |  || |   ||| |  |   | || |                           
GTATTCCCCAGAGAAGATCTGGTATATTGATCAGATGCTCAAGGTTCTGTCTGAGgtatagtataaatataagacagaagcttttgtagtgaattaaaatcttccaggtgaaaa--taccaaagcatgctagctttttagggtattcacgatcagtg---------------------------

upper sequence: AT1G60070.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 9
GTTTGCTCCAGAGAAAATCTGGTACATTGATCAAATGCTAAAGGTTCTATCTGAGgtatattttgaacccaggttgtgagattacgtttttccgtacacttaactaacaacaaactttttacttcatatgaatttatgtaggttctaatctgagagttctaatcttgattatgtccataacag
|||| | || |||||||| |||||||||||||| ||||| |||||||| ||||||||||   || ||  |||      | |||         ||| || |  | | |    ||| |   || || |      ||| || |  ||| | | |   | |  |||  | |  |             
GTTTTCCCCTGAGAAAATATGGTACATTGATCAGATGCTCAAGGTTCTTTCTGAGgtatgcattaaagacag------aaatt---------cgtccaatctattgattctaaattgcatatttgaagcttgtttttg-aatttcaatttttgaaatattaacttggggtg------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124953755|gb|EL028909.1|EL028909
EST:     TCCAGAGAAAATCTGGTACATTGATCAAATGCTAAAGGTTTCTATCTGAG                         GCTGGAACTTATGTGAAAGAGGATGTATGGCACGCG
genomic: TCCAGAGAAAATCTGGTACATTGATCAAATGCTAAAGG-TTCTATCTGAGgtatattttg ... tccataacagGCTGGAACTTATGTGAAAGAGGATGTATGGCACGCG