Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTCTAAGGTTGAAATGCCCCATCATTTTATAAATAGTGGAATGACAGATATCTTAAACCAGAGCGCGCACAAAAGGGCCTCAGGCGTGTTGAATGAAgtgagtttagcgttctctctctatttatcaaattttgtgaaaacacaagcctgactcatccaatttttgctttgatgtag

Basic information

species Arabidopsis thaliana
transcript AT1G58350.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G58350.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA17G26570.1 (Glycine max), 5'ss of exon 9
---------------GTACTCTAAGGTTGAAATGCCCCATCATTTTATAAATAGTGGAATG-ACAGATA--TCTTAAACCAGAGCGCGC--ACAAAAGGGCCTCAGGCGTGTTGAATGAAgtgagtttagcgttct-ctctctatttatcaaattttgtgaaaacaca---agcctgactcatccaa-------tttttgctttgatgtag----
               |||||||||||| || ||||| ||||||| ||||||||||||  |  |||||    | |  |    | |    |   |  | | |    |  | ||     |     |  |   |     | || | |     |  || || || |||| | |    |    | | |   ||       ||||| | || |  ||     
GTCAATATGGATGGTGTACTCTAAGGTCGAGATGCCTCATCATTATATAAATAGTGGTGTACACAGAAGAGTTTCCAGTTTGTGGAAACTACCTGATGAGgtaaatacttgactgttccttcgtatcaggaaagatgctttgtgaagttggaacttggtaaaaaaaaatttggtgcaaataactaaaagcatattttttcccttaaattatgcag