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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGAGAAGAGACTTATACCGCATTTGAGAATATCTACCCAGTTCTTAGAGAATTCAGGAAGGTCCAGCAATAATAGTATgtaagttcaactttctttatctccatttacattttataccccttaatcaatcaacagtttgattatgactatttcgattcgaaagcag

Basic information

species Arabidopsis thaliana
transcript AT1G55520.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164055395|gb|ES177292.1|ES177292
EST:     AGGAAGGTCCAGCAATAATAGTAT                         AGCCTTACCATATTGAAGGCAAAAACCATGTTCACGTTTGGATTGCCATGA
genomic: AGGAAGGTCCAGCAATAATAGTATgtaagttcaa ... tcgaaagcagAGCC-TACCATATTGAAGGCAAAAACCATGTTCACGTTTGGATTGCCATGA
EST: gi|116397050|gb|EG439642.1|EG439642
EST:     ATATCTACCCAGTTCTTAGAAAATTCAGGAAGGTCCAGCAATAATAGTAA                         AGCCTACCATATTGAAGGCAAAAACCATGTTCACGTTTGGATTCCCATGAA
genomic: ATATCTACCCAGTTCTTAGAGAATTCAGGAAGGTCCAGCAATAATAGTATgtaagttcaa ... tcgaaagcagAGCCTACCATATTGAAGGCAAAAACCATGTTCACGTTTGGATTGCCATGAA
EST: gi|19740766|gb|AU226119.1|AU226119
EST:     ATATCTACCCAGTTCTTAGAGAATTCAGGAAGGTCCAGCAATAATAGTAT                         AGCCTACCATATTGAAGGCAAAAACCATGTTCACGTTTGGATTGCCATGAA
genomic: ATATCTACCCAGTTCTTAGAGAATTCAGGAAGGTCCAGCAATAATAGTATgtaagttcaa ... tcgaaagcagAGCCTACCATATTGAAGGCAAAAACCATGTTCACGTTTGGATTGCCATGAA