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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGAGAACACATTGAATTATGGCCTTGAGAGAGTCTGGGCAATTGGTTACATTAAAAGTTCACGCCGgtgagttattagtttttggctcccttctcttattaataaattgatgcttgtccgaactgttatccgggagttgatgttccctctcatttgatagtgaaat...

Basic information

species Arabidopsis thaliana
transcript AT1G52360.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G000645_T03 (Zea mays), 5'ss of exon 9
GCTAGAGAACACATTGAATTATGGCCTTGAGAGAGTCTGGGCAATTGGTTACATTAAAAGTTCACGCCGgtgagttattagtttttggctcccttctcttattaataaattgatgcttgtccgaactgttatccgggagttgatgttccctctcatttgatagtgaaat-------
 || ||||||||| | || |||||||||||||||||||||||  |||| ||||| ||  | ||  |  ||| ||  || |  |||    || ||| |  | | | ||   || || | ||   ||  |  | |  |   || || |  | | ||| ||   |||  ||        
ACTTGAGAACACACTAAACTATGGCCTTGAGAGAGTCTGGGCTGTTGGATACATGAAGGGGTCTAGAAGgtaag--atca--tttgcattctctttttgtttcagtag--tgctgttagttgtaatggaca-ctagctattaatatagcatttcacttttgagtagaactagaagc

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 8
GCTAGAGAACACATTGAATTATGGCCTTGAGAGAGTCTGGGCAATTGGTTACATTAAAAGTTCACGCCGgtgag-ttattagtttttggctcccttctcttattaataaattgatgcttgtccgaactgttatccgggagttgatgttccctctcatttgatagtgaaat-------
 || ||||||||| | || |||||||||||||||||||||||  |||| ||||| ||  | ||| |  ||| || | ||     ||  |||   || | | | || |    ||    || |         || |      || || |  | ||||| ||   |||  ||        
ACTTGAGAACACACTAAACTATGGCCTTGAGAGAGTCTGGGCTGTTGGATACATGAAGGGATCAAGAAGgtaagatcatctacattctgctt--ttgtttcagtagtg--ctgtcagttattatggacactaacta----ttaatatatcatctcacttttgagtagaactagaagc

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 9
GCTAGAGAACACATTGAATTATGGCCTTGAGAGAGTCTGGGCAATTGGTTACATTAAAAGTTCACGCCGgtgagttattagtttttggctcccttctcttattaata-aattgatgcttgtccgaactgttatccgggagttgatgttccctctcatttgatagtgaaat-----
||| |||||||||||||| ||||| ||||| ||||| ||||| ||||| ||  | ||  ||||||||||||||||| |  |||||||| |    |   || | |||  ||||  ||  | ||  | ||||   ||  |   | |||||   |   |    |  || |||      
GCTTGAGAACACATTGAACTATGGTCTTGAAAGAGTTTGGGCTATTGGATATCTGAAGGGTTCACGCCGgtgagtttt--gtttttggat----tgaattgtgaatgtaatttctgagtctcatatctgtaggccctggaatcatgttgagtgggacaatagtgtcaaactgtca

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 9
GCTAGAGAACACATTGAATTATGGCCTTGAGAGAGTCTGGGCAATTGGTTACATTAAAAGTTCACGCCGgtgagttattagtttttggctcccttctcttattaataa-attgatgcttgtccgaactgttatccgggagttga--tgttccctctcatttga-tagtgaaat
||| |||||||| ||||||||||| ||||| ||||| |||||  |||| ||||| ||| |||||||||||| |||   |  |  ||  ||  || ||   | || ||  | |  |  |  |   ||   ||||  |    ||||  | ||   |||  |||||    |||| |
GCTCGAGAACACGTTGAATTATGGTCTTGAAAGAGTTTGGGCTGTTGGATACATGAAAGGTTCACGCCGgttagtgtcttctcctt--cttactactaccactactactactttttttcatttcaat--ttattggtcttttgaatttttttttctggtttgaactttgaagt