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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAGATGCAGAAGACTTGGTTGTGTAAAAGGTGTGAGACCATGAATGCAAAATTAAGgtataatctcatcctttactgtttaggatctaaatttcaggctattgcagtagttaagatatcttatctttctctgcttgaag

Basic information

species Arabidopsis thaliana
transcript AT1G50710.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G50710.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA08G42870.1 (Glycine max), 5'ss of exon 9
AATGAGATGCAGAAGACTTGGTTGTGTAAAAGGTGTGAGACCATGAATGCAAAATTAAGgt------------------ataatctcat--cctttactgtttaggatctaaatttcaggctattgcagtagttaagatatcttatctttctctgcttgaag--
 |||||||||||||||||||| | |||||||||||||||||||||| ||| ||||| ||||                  ||| | ||||     |||||||| ||| | | || ||     || |  |  || | ||||     ||   |   |  ||||    
GATGAGATGCAGAAGACTTGGCTCTGTAAAAGGTGTGAGACCATGAGTGCGAAATTGAGgtttgtttattatctgctatatattttcattgttcttactgttgaggttttgaaatttgaaataat--aagagatgagatgataaat---tgaataattgagaat

upper sequence: AT1G50710.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA18G11000.1 (Glycine max), 5'ss of exon 9
AATGAGATGCAGAAGACTTGGTTGTGTAAAAGGTGTGAGACCATGAATGCAAAATTAAGgtataat-ctcatcc----tttactgtt-taggatctaaatttcaggctattgcagtagttaagatatcttatctttctctgcttgaag-----------
 |||||| ||||||||||||| | |||||||||||||||||||||| ||| ||||| |||| |  | || |||     | |||| |  | |    | | | | |    | || ||  |||  || || | |  |         |||             
GATGAGACGCAGAAGACTTGGCTCTGTAAAAGGTGTGAGACCATGAGTGCGAAATTGAGgtttgtttcttatctgctatatactttcattgtgcttcactataaatacactgtagaggttttgaaatttgaaataataagagatgagatgataaattga

upper sequence: AT1G50710.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv19s0090g00440.t01 (Vitis vinifera), 5'ss of exon 9
AATGAGATGCAGAAGACTTGGTTGTGTAAAAGGTGTGAGACCATGAATGCAAAATTAAGgtataatctcatcctttactgtttaggatctaa-atttcaggctattgcagtagttaagat---atcttatctttctctgcttgaag--------------
 ||||  | || || |||||| | |||||||||||||||||||||| ||||||||| |||| |  |  | ||   | || |||    | |     | || |  |||    | | | ||     ||  | || || |    |   |               
GATGAACTACAAAAAACTTGGCTATGTAAAAGGTGTGAGACCATGAGTGCAAAATTGAGgt-ttgttgcttcagctgctattttctgtttgttgctgcatgacattagtattgcttagccttcattctttcatttttaattcagaaaattctttgcaaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125242351|gb|EL256436.1|EL256436
EST:     TGAATGCAAAATTAAG                         GGTTTTGGAAAATGTTCTCCTCCTTGAGACATACNCCCCTGACTCCATATC
genomic: TGAATGCAAAATTAAGgtataatctc ... ctgcttgaagGGTTTTGGAAAATGTTCTCCTCCTTGAGACATACACCCCTGACTCCATATC